Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d12
         (113 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   2.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    19   7.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           19   7.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              19   7.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    18   9.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    18   9.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    18   9.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 67  EPSYFEVFITKSNW 108
           EP Y+ + + K NW
Sbjct: 209 EPIYYNLTMVKLNW 222


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 1   LYLNLYQPVYR 33
           LYLN+Y P  R
Sbjct: 106 LYLNVYVPADR 116


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 1   LYLNLYQPVYR 33
           LYLN+Y P  R
Sbjct: 106 LYLNVYVPADR 116


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +1

Query: 49 CPTAIHEPSY 78
          CP A+ +PS+
Sbjct: 32 CPEALFQPSF 41


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -2

Query: 79  NSWARVWPLD 50
           + W R+W LD
Sbjct: 131 DEWDRLWVLD 140


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 52  DKNEHSSDKPVDRDL 8
           D+N HSS   +D  +
Sbjct: 238 DENRHSSTLDIDHKM 252


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 4/8 (50%), Positives = 7/8 (87%)
 Frame = +1

Query: 64  HEPSYFEV 87
           H+P YF++
Sbjct: 240 HDPDYFDI 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,090
Number of Sequences: 438
Number of extensions: 380
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 18
effective length of database: 138,459
effective search space used:  2630721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)