Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29d04
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 86 4e-18
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 84 2e-17
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 80 3e-16
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 77 2e-15
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 72 8e-14
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 46 5e-06
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 32 0.084
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 31 0.19
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.4
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 7.3
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 9.6
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 86.2 bits (204), Expect = 4e-18
Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 1/167 (0%)
Frame = +2
Query: 158 LYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 337
LYI+G++ S T W E +P+ EVI +V A + E+ A+ +AK A+KTW K +
Sbjct: 23 LYINGEWHKSAET-W-ETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEK 80
Query: 338 QQLMFKFARLLRENQSKLAAKITEEQGK-TIADAEGDVLRGIQSVEHCCSITSLQLGDSI 514
+L+ K A L ++ LAA + GK +++A GDV I + +C G I
Sbjct: 81 GELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVI 140
Query: 515 QNIAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCI 655
+ + ++ + P+GV G + +N+P+ + W PAL GN CI
Sbjct: 141 PTGPEKL-AYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGN-CI 185
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 83.8 bits (198), Expect = 2e-17
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 1/166 (0%)
Frame = +2
Query: 161 YIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 340
++ G+++ S E+ NPAT E+IG+V + + +E A+ AA A+KT+ T + R
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQRS 80
Query: 341 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQN 520
QL+ ++A L+ EN+ L +T E GK ++ AE +V ++ + GD +
Sbjct: 81 QLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDVAPS 140
Query: 521 IAKDMD-THSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCI 655
+ + S K P+GV + +NFP + AL G T I
Sbjct: 141 SLQSQNFLISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAI 186
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 79.8 bits (188), Expect = 3e-16
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Frame = +2
Query: 158 LYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT---WSKSTV 328
L+I+ Q+VDS +++ +P+T ++I V +A ++++ A+ A+ A++T W K +
Sbjct: 25 LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSS 84
Query: 329 LTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGD 508
R + + + A + +N LA+ T + GK+I A GDV + G
Sbjct: 85 AQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQ 144
Query: 509 SIQNIAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCI 655
+I+ K ++ P+GV G + +NFP ++ W PA+ GNT I
Sbjct: 145 TIETDIKRF-AYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTII 192
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 77.0 bits (181), Expect = 2e-15
Identities = 44/165 (26%), Positives = 79/165 (47%)
Frame = +2
Query: 161 YIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 340
YI G++V + + ++ NP NE + V + + +E A+ A A+ ++ S + R
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFLSYRNSDIKERY 86
Query: 341 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQN 520
++ ++ L+ EN LA +T E GK + DA+G+V+ + ++ GDS +
Sbjct: 87 AILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRISGDSSMS 146
Query: 521 IAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCI 655
+ K P+GVVG + +NFP + AL G T +
Sbjct: 147 SNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVV 191
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 71.7 bits (168), Expect = 8e-14
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 6/177 (3%)
Frame = +2
Query: 143 APTTKLYIDGQYVD--SRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT-- 310
AP L+IDG++V I L NPAT E+IG A+ ++ SA++ A +++
Sbjct: 18 APENSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI 77
Query: 311 WSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSIT 490
W+K R ++ K A+++RE + LA T GK A D+ E+ +
Sbjct: 78 WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVA 137
Query: 491 SLQLGDSIQNIAKDMDTHSY--KVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCI 655
+ + ++ + P GV+G + +NFP+ + LW PA+ +GN C+
Sbjct: 138 ETDNPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGN-CV 193
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 46.0 bits (104), Expect = 5e-06
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
Frame = +2
Query: 218 PATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAA 397
P ++G V + ++ ++ A+ A K W ++ R+ + + NQ K A
Sbjct: 10 PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69
Query: 398 KITEEQGKTIADAE-GDVLRGIQSVEHCCS--ITSLQLGDSIQNIAKDMDTHSYKV-PLG 565
++ GKT+ DA G++L ++ + + SL+ ++ K PLG
Sbjct: 70 IACKDTGKTLVDAAFGEILVTLEKINWTLANGEQSLRPTKRPNSLLTSYKGGYVKYEPLG 129
Query: 566 VVGGVAAFNFPVMIPLWMFPPALVTGNTCI 655
V+ + ++N+P+ L AL GN +
Sbjct: 130 VIAALVSWNYPLHNALGPIISALFAGNAIV 159
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 31.9 bits (69), Expect = 0.084
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 212 TNPATNEVIG---RVPEATQDELTSALDAAKRAYKTWSKSTVLTR 337
T+ TNE++ ++ E +D L +L A+K YK WS+ L R
Sbjct: 5 TDMETNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRR 49
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 176 YVDSRTTNWIELTNPATNEVIGRV-PEATQDELTSALDAAKRAY 304
Y +RT W+EL NPA EV G + E + E T+++ A RA+
Sbjct: 498 YEPARTGEWMELLNPA--EVFGNIMVEYSYPECTTSVILALRAF 539
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 551 KVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCI 655
K +GVVGG +P P+ P ++TGN +
Sbjct: 291 KGQVGVVGGYPVMGYPPPSPVLQKPDLIMTGNRTV 325
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 284 PRRKSIHPELPLAP 243
PR++ + PELPLAP
Sbjct: 760 PRKRRVLPELPLAP 773
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 9.6
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = -1
Query: 204 IQLVVLESTYCPSIYSFVVG 145
I++V+++ TY ++Y +V+G
Sbjct: 1206 IEVVIIDQTYFINVYKYVIG 1225
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 98 KSESQLVLRRSYSSSAPTTKLYIDGQYVDSRTTNWI 205
KS +LR++Y P+ +YIDG + + TNW+
Sbjct: 1141 KSTLVELLRKTY----PSEDIYIDGYPLTNIDTNWL 1172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,109
Number of Sequences: 5004
Number of extensions: 52981
Number of successful extensions: 132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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