Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d04
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.5  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   7.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   7.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 566 VVGGVAAFNFPVMIPLWMFPP 628
           VV       +P ++P W  PP
Sbjct: 471 VVAAALTGTYPTLLPQWCLPP 491


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 216 LVSSIQLVVLESTYCPSIYSFVVGAELLYERRSTSWDS 103
           ++S+   V L ++   SIYSF+    L++   S  W S
Sbjct: 461 ILSAAYNVELHNSSPFSIYSFLERLNLIFMSSSLQWSS 498


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 216 LVSSIQLVVLESTYCPSIYSFVVGAELLYERRSTSWDS 103
           ++S+   V L ++   SIYSF+    L++   S  W S
Sbjct: 499 ILSAAYNVELHNSSPFSIYSFLERLNLIFMSSSLQWSS 536


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 655 YTRVSGHQRWREHPQWDHHR 596
           Y ++S     REHP WD  R
Sbjct: 161 YKKLSVEVVRREHPFWDDQR 180


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 388 IGG*NH*RARENYSRC*GRC 447
           +GG     + E +SRC GRC
Sbjct: 31  LGGRGKCPSNEIFSRCDGRC 50


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 388 IGG*NH*RARENYSRC*GRC 447
           +GG     + E +SRC GRC
Sbjct: 31  LGGRGKCPSNEIFSRCDGRC 50


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 5/8 (62%), Positives = 5/8 (62%)
 Frame = -2

Query: 533 CLWRCFGC 510
           C W CF C
Sbjct: 605 CCWHCFNC 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,415
Number of Sequences: 438
Number of extensions: 3991
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)