Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29c22
         (345 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2Z4U8 Cluster: Putative uncharacterized protein; n=7; ...    31   6.9  
UniRef50_Q1HBE4 Cluster: NADH dehydrogenase subunit 6; n=1; Thau...    30   9.2  

>UniRef50_A2Z4U8 Cluster: Putative uncharacterized protein; n=7;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 481

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
 Frame = +3

Query: 24  KVSLLMG*NLFGLS---DIFATLQESHLLFYILKKYHN--KKNFSVF 149
           ++S+L+G +   ++   DIF   Q  HL  ++LKKY    +KNFS F
Sbjct: 330 ELSVLLGGSFVAVNVFADIFRKNQNVHLWLHVLKKYRKMIRKNFSEF 376


>UniRef50_Q1HBE4 Cluster: NADH dehydrogenase subunit 6; n=1;
           Thaumamermis cosgrovei|Rep: NADH dehydrogenase subunit 6
           - Thaumamermis cosgrovei
          Length = 136

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 96  LLFYILKKYHNKKNFSVFFVMIFSMLFE*SKLH 194
           LLFYI   + NK  +++ F++  SMLF   K H
Sbjct: 58  LLFYISMLFSNKPYWNIIFLLSLSMLFPCYKWH 90


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,813,076
Number of Sequences: 1657284
Number of extensions: 3651751
Number of successful extensions: 6753
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6752
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10703468375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)