Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29c22
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm rece...    27   3.6  
U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical p...    26   8.3  

>AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 66 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 340 FFLGNLKSQLFIFITI-YVESVSSYFSILL**FXTLFL 230
           FF G + + LFIFITI Y++++S  +  ++  F  L L
Sbjct: 15  FFSGCIANSLFIFITIKYIKNISVPYKRMIVVFAALGL 52


>U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical
           protein B0432.1 protein.
          Length = 264

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 200 TSMKFTSFE*HRKYHNKKNTKVFFVMI--FFQ 111
           TS +   F  + +YH   +T ++F++I  FFQ
Sbjct: 206 TSFRIREFPRNERYHKNDHTLLYFIIIHSFFQ 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,274,868
Number of Sequences: 27780
Number of extensions: 98479
Number of successful extensions: 178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)