Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29c19
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ...    31   0.79 
At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR) domai...    30   1.8  
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    29   3.2  
At4g28600.1 68417.m04090 calmodulin-binding protein similar to p...    29   3.2  
At4g12330.1 68417.m01951 cytochrome P450 family protein contains...    29   3.2  
At5g36920.1 68418.m04425 expressed protein predicted protein, Ar...    28   5.6  
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    28   5.6  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    28   5.6  
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    28   7.4  
At1g59520.3 68414.m06686 expressed protein (CW7)                       28   7.4  
At1g49350.1 68414.m05532 pfkB-type carbohydrate kinase family pr...    28   7.4  
At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family prote...    28   7.4  
At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    27   9.8  

>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
           putative similar to PIF3 like basic Helix Loop Helix
           protein (PIL1) [Arabidopsis thaliana] GI:22535492;
           contains Myc-type, 'helix-loop-helix' dimerization
           domain signature, PROSITE:PS00038
          Length = 416

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
 Frame = +2

Query: 170 PEQQSSTETAAVCKNEKLLNKLE----SSSYNKSNMDQLIAI--VNFLE--KKNINYI-- 319
           P+ +       VC+N ++L K+     + S+ K     L+ +    + E  KKNI  +  
Sbjct: 24  PKLKDEDYMELVCENGQILAKIRRPKNNGSFQKQRRQSLLDLYETEYSEGFKKNIKILGD 83

Query: 320 LNVMPVMQDERKMSKRKKKVINNNKYILFNS 412
             V+PV Q + +  K   + +NNNK  L +S
Sbjct: 84  TQVVPVSQSKPQQDKETNEQMNNNKKKLKSS 114


>At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 546

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 248 YNKSNMDQLIAIVNFLEKKNINYILNVMP-VMQDERKMSKRKKKVINNNKYILFNSWYTK 424
           YN S M  +  ++  LEKKNIN  +     + +   ++S R + +I     ++F S YT+
Sbjct: 22  YNGSRMGFIYHLIMALEKKNINVFVGFNGCICEPVERLSNRIESII---VLVIFTSRYTE 78

Query: 425 IK 430
            K
Sbjct: 79  SK 80


>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 425 IKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKMGK 535
           IK   WP +   W+ ++N   +AD +  F+ + K GK
Sbjct: 127 IKWRGWPETANTWEPLENLQSIADVIDAFEGSLKPGK 163


>At4g28600.1 68417.m04090 calmodulin-binding protein similar to
           pollen-specific calmodulin-binding protein MPCBP
           GI:10086260 from [Zea mays]
          Length = 739

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/95 (20%), Positives = 39/95 (41%)
 Frame = +2

Query: 89  VGH*KNISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMD 268
           VG   N SS +     +  +K +  N+ E + S    +    E+    L    Y K N++
Sbjct: 48  VGRDYNGSSALSTAESENAKKLDNGNIEEAELSLRETSSLNYEEARALLGRIEYQKGNIE 107

Query: 269 QLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKK 373
             + +   ++   I   +     ++++RK  +R K
Sbjct: 108 AALRVFEGIDINGITVKMKTALTVREDRKHRRRSK 142


>At4g12330.1 68417.m01951 cytochrome P450 family protein contains
           Pfam profile:PF00067 cytochrome p450
          Length = 518

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/47 (23%), Positives = 29/47 (61%)
 Frame = +2

Query: 218 KLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKM 358
           +L+NKLE     +  +D+++   N +E+K+I  +  ++ +M++  ++
Sbjct: 332 ELINKLEIMKRAQQELDKVVGKNNIVEEKHITKLPYILSIMKETLRL 378


>At5g36920.1 68418.m04425 expressed protein predicted protein,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 82

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 642 NSAKFALVSTAVCLFLLAGIAALSLEDDDVDRSAIFLP 529
           N++   L+S  +CL  + G+   S+ DDD+   AI+ P
Sbjct: 5   NTSHVLLLSLLLCLMFVIGLVEASIPDDDMG-PAIYTP 41


>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 186 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 58
           E CCSG F   D CKP +      +     CP A+ +  D+ T
Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 186 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDT 58
           E CC+G F   D C+P +        +FF   CPTA+ +  D+ T
Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGT 233


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 384 TTINTFCLTVGTLRSSSPSGLVA 452
           T++ + CLT+GTL    PSG+ A
Sbjct: 287 TSVLSICLTIGTLHYVIPSGVAA 309


>At1g59520.3 68414.m06686 expressed protein (CW7)
          Length = 388

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 146 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILN 325
           +KS  +NM    S T T A+C NE L     S     S + +++  V +     +N+ L+
Sbjct: 114 RKSFYLNMIAHTSFTVTVAICSNEALKTYQGSKDTKLSPIYKVVKTV-YASPSRVNFHLD 172

Query: 326 VMPVMQ 343
               M+
Sbjct: 173 SKKAME 178


>At1g49350.1 68414.m05532 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 378

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 191 ETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMS 361
           E  +V K++++ +  +  +    N D+LIA+ N L  KN+ +     P   DE K+S
Sbjct: 160 EPVSVTKSQRIASIAKYVTIVSPNQDELIAMANALCAKNLFH-----PFRSDENKLS 211


>At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 324

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 LVARPCGIW*KTRPNWQILCSFLITLKRWVKKW 542
           LVA  C I  K RP W +   FLI + R++  W
Sbjct: 161 LVAPMCKISDKVRPKWPV-DQFLIMISRFLPTW 192


>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 186 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCD 67
           E CC+G F+  + C P K            CPTA+ +V D
Sbjct: 139 EYCCTGAFSKPETCPPTKYSKIFKGA----CPTAYSYVYD 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,170,371
Number of Sequences: 28952
Number of extensions: 345963
Number of successful extensions: 950
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)