Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29c10
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    27   3.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   4.3  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   9.9  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   9.9  

>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 521 GIVVPSSSGLTNPSNITCFSLNLLTIVTLSL 429
           GI  PS SG T+ + +   +LNL  +V LSL
Sbjct: 25  GIAGPSGSGKTSVAQLIVKALNLPHVVILSL 55


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
 Frame = -1

Query: 587 TMSFTLRSATAASTEYNGPMT*GIVVPSSSGLTNPSNITCFSLNLLTIVTLSLMLQKVA* 408
           T + T  SAT++S +YN         PSS+ L++ ++ T  S +   + +++      A 
Sbjct: 261 TTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSAS 320

Query: 407 I*ALSNPSTIINTLNLANGERHLTF--KQISVSIKLHGIMVMRSTQLGSPSPFKLIGVNI 234
              LS+ S+  +T   +     L+      + S     +  + ST   S S   L  VN 
Sbjct: 321 STPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 380

Query: 233 T 231
           T
Sbjct: 381 T 381


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 320 LRSV*MLDVVLHLPNS 367
           LRS  +LD+VLH PNS
Sbjct: 221 LRSDNILDIVLHYPNS 236


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 135 VYENSRRFEFINPDEIASGKRLIIKHLQDESQSDI 239
           ++E  RR++ +NP+ + S    ++  +QD  + +I
Sbjct: 124 IFEIGRRYKVLNPNRLGSTYGKLMYFVQDSMRPEI 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,048
Number of Sequences: 5004
Number of extensions: 54821
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)