Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29c10
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical pr...    31   0.56 
AL117200-7|CAB55059.1|  221|Caenorhabditis elegans Hypothetical ...    31   0.99 
AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical ...    29   4.0  
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical
           protein F54E7.5 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 388 GFDSAYIQATFCSISDSVTIVNKFNEKHVMFDGFVRPDDEGTTMPYVIGPLYSVDAAVAD 567
           G    +  ATF SISD   IV+K+ +   +    +  D+   T  + + P+  + + V D
Sbjct: 226 GMSPIHTNATFISISDEKPIVSKYIDFFSLMPPMIEYDESHLTDSFTVAPMPRLGSLVYD 285


>AL117200-7|CAB55059.1|  221|Caenorhabditis elegans Hypothetical
           protein Y50E8A.11 protein.
          Length = 221

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -1

Query: 617 TLSVGFSIEFTMSFTLRSATAASTEYNGPMT*GIVVPSSSGLTNPSNITCFSLNLLTIVT 438
           T S   +   T   T  + T   +E   P T  I+  ++   +NPSNI  +S+ +L IVT
Sbjct: 108 TTSTTTTTSTTTEITTTTTTVLISEV--PSTTPIIKVAAFQQSNPSNIVLYSVLILVIVT 165

Query: 437 LSLML 423
           L +++
Sbjct: 166 LLILV 170


>AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical
           protein C24B9.3a protein.
          Length = 429

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 289 ITIMPCSLMDTEICLNVRCRSPFAKFKVLIIVDGFDSAYIQATF 420
           ++++  S   + ICL   C S   +  ++I+VD   +AY Q TF
Sbjct: 9   VSLLVASTSASHICLQTACSSFNVESDIVIVVDA-SNAYDQVTF 51


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
 Frame = -2

Query: 604 VFQLNLPCPSLYD----RRQQRRQ 545
           V    +PCP LYD    +RQQRRQ
Sbjct: 230 VLSAGMPCPELYDTHNRQRQQRRQ 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,851,720
Number of Sequences: 27780
Number of extensions: 297829
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)