Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29c09
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    64   2e-11
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    56   7e-09
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    37   0.003
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    33   0.030
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.86 
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   2.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   8.0  

>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 45/150 (30%), Positives = 73/150 (48%)
 Frame = +1

Query: 151 EMLQKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDR 330
           E  + V++S+   L  ++H       E+MG + G+V   GA + I+ S  L  ++    R
Sbjct: 30  EFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQGKVE--GASLIILDSFALP-VEGTETR 86

Query: 331 VEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASF 510
           V   EE   + +V+   L   V +   V+GWYHSHP+   W S VD+ TQ   Q+    F
Sbjct: 87  VNAHEEAQ-EYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPF 145

Query: 511 VGIIFAVFLTDQSTKAPSVQITCFQSINEG 600
           V ++       +S ++P V I  F++   G
Sbjct: 146 VAVVLD---PKRSLESPYVNIGAFRTYPVG 172


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 55.6 bits (128), Expect = 7e-09
 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
 Frame = +1

Query: 166 VRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEISE 345
           V +SS   L  ++H       E+MGL++GE  D+      V  V +  + +    V +  
Sbjct: 30  VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFT----VRVVDVFAMPQSGTGVSVEA 85

Query: 346 -EQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGII 522
            + + Q  +   ++  + G+P  VVGWYHSHP    W S VD+ TQ  ++++    V ++
Sbjct: 86  VDPVFQKNMM--DMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVV 143

Query: 523 FAVFLTDQSTKAPSVQITCFQSIN 594
                  QS K   V I  F+ IN
Sbjct: 144 VDPI---QSVKG-KVVIDAFRLIN 163


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 406 LRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGIIFA 528
           L  +GW H+HP  T + S VDL T   YQ M    + I+ A
Sbjct: 334 LLTLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMA 374


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +1

Query: 223 KEEIMGLLIGEVHDNGALVSIVSSVILR-RLDKKPDRVEISEEQLVQATVRAEELAAEVG 399
           K  ++G+L+G+  +NG +V++ +S  +    D+K   V   +   +++     E+  ++ 
Sbjct: 39  KRRVVGILLGQ--NNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESM---NEMFKKIN 93

Query: 400 QPLRVVGWYHSHPHITVWPSHVDL 471
              ++VGWYH+ P +   PS +++
Sbjct: 94  ANEKLVGWYHTGPQLR--PSDLEI 115


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = -1

Query: 419 PTTLRGWPTSAANSSALTVA*TSCSS-DISTRSGFLSKRRSITDDTIETSAPLS*TSPIS 243
           P+T    P+S+  SS +T   +S SS   S+ S F S   +I+     +S P S  S +S
Sbjct: 519 PSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIP-STFSSVS 577

Query: 242 KPMISSFSVDNACCIQTKATSDDKRTFCSIS 150
             + SS S  ++  +   ++S    TF S S
Sbjct: 578 SILSSSTSSPSSTSLSISSSSTSS-TFSSAS 607


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +1

Query: 454 PSHVDLATQSMYQRMDAS-FVGIIFAVFLTDQSTKAPSVQITCFQSINEGASQSRIEIEM 630
           P  + LA  ++Y  M  S F G+  +V L   +    +V    FQSI      SR ++  
Sbjct: 377 PFQIALALSNLYHLMGYSAFTGVAASVILFPCNIIVANVYKK-FQSILMKNKDSRSKLMT 435

Query: 631 EIVTNTDSLLTNNFET 678
           EI+ N  S+    +ET
Sbjct: 436 EIINNIRSIKLYAWET 451


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 383 NSSALTVA*TSCSSDISTRSGFLSKRRSITDDTIETSAPLS*TSPISKPMISSFSVD-NA 207
           NSS L    TSC++  S  +G  S   +    T+  ++  S + PI  P  S+ S D N+
Sbjct: 218 NSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPI--PPTSTSSTDTNS 275

Query: 206 CCIQTKATS 180
             + T +TS
Sbjct: 276 SPLPTTSTS 284


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +1

Query: 265 NGALVSIVSSVILRRLDKKPDRVEISEEQLVQATVRAEELAAEVGQPLRVV 417
           N  LV  + S I   L++  D ++I  E+L+Q+  R   +AA +  PL+++
Sbjct: 399 NPELVEAIISYINSLLNQGMDWLDI--EKLIQSQKRRSPVAAAIQIPLKLI 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,240
Number of Sequences: 5004
Number of extensions: 45373
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)