Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29c09
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 59 4e-09
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 59 4e-09
05_06_0257 + 26723858-26724049,26724073-26724230,26724886-267250... 52 3e-07
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 46 2e-05
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 40 0.003
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093... 36 0.041
04_03_0108 - 11340504-11340680,11341580-11341665,11341784-113418... 31 1.2
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 30 2.1
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802... 28 6.3
01_01_1106 + 8750597-8754031 28 6.3
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 58.8 bits (136), Expect = 4e-09
Identities = 44/145 (30%), Positives = 69/145 (47%)
Frame = +1
Query: 160 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 339
++V +SS L ++H + E+MGL++GE D+ V V + + + V +
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYT----VRVVDVFAMPQSGTGVSV 82
Query: 340 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGI 519
V T + L + G+P VVGWYHSHP W S VD+ TQ ++ ++ V +
Sbjct: 83 EAVDHVFQTNMLDMLK-QTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAV 141
Query: 520 IFAVFLTDQSTKAPSVQITCFQSIN 594
+ QS K V I F+ IN
Sbjct: 142 VIDPI---QSVKG-KVVIDAFRLIN 162
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 58.8 bits (136), Expect = 4e-09
Identities = 44/145 (30%), Positives = 69/145 (47%)
Frame = +1
Query: 160 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 339
++V +SS L ++H + E+MGL++GE D+ V V + + + V +
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYT----VRVVDVFAMPQSGTGVSV 82
Query: 340 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGI 519
V T + L + G+P VVGWYHSHP W S VD+ TQ ++ ++ V +
Sbjct: 83 EAVDHVFQTNMLDMLK-QTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAV 141
Query: 520 IFAVFLTDQSTKAPSVQITCFQSIN 594
+ QS K V I F+ IN
Sbjct: 142 VIDPI---QSVKG-KVVIDAFRLIN 162
>05_06_0257 +
26723858-26724049,26724073-26724230,26724886-26725024,
26725130-26725315,26727117-26727310,26728113-26728193,
26728248-26728338,26728414-26728590
Length = 405
Score = 52.4 bits (120), Expect = 3e-07
Identities = 34/111 (30%), Positives = 58/111 (52%)
Frame = +1
Query: 307 RLDKKPDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSM 486
R ++K DRVE++ E L AT +AE ++ + GW D+ TQ+M
Sbjct: 83 RCERKKDRVEVNPELLAAATAQAE-ISFFPSISVIFEGWTLLVISDLHESYTADVRTQAM 141
Query: 487 YQRMDASFVGIIFAVFLTDQSTKAPSVQITCFQSINEGASQSRIEIEMEIV 639
+Q M+ FVG+IF+ F ++ + K +Q+ FQS+ G QS + + ++
Sbjct: 142 FQLMEPGFVGLIFSCF-SEDAQKVGKIQVIAFQSLG-GNQQSVVPVNDPVI 190
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +1
Query: 157 LQKVRLSSDVALVCMQHALSTEKEEIMGLLIGEV 258
L +VR+ +V L C+ HAL+TE EE+MGLL G++
Sbjct: 3 LTEVRIGEEVWLTCLSHALTTETEEVMGLLFGDI 36
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 343 EEQLVQATVRAEELAAEV-GQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGI 519
+ + + +V A L ++ G+ VVGWYHSHP W S +D++TQ + Q+ F+ +
Sbjct: 131 DHNVSEVSVFANTLMTDLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAV 190
Query: 520 IFAVFLTDQSTKAPSVQITCFQS 588
+ ++ A V+I F++
Sbjct: 191 VID---PTRTVSAGKVEIGAFRT 210
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 367 VRAEELAAEVG-QPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGIIFA 528
V EE+ A + Q L GW H+HP T + S +DL TQ YQ M V I+ A
Sbjct: 411 VSEEEIHAILSEQSLYPAGWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIA 465
>01_05_0018 -
17208358-17208367,17208485-17208537,17209321-17209383,
17209971-17210045,17210090-17210104,17210983-17211045,
17211129-17211218,17211396-17211714,17211814-17211860,
17211949-17212054,17212539-17212592,17212806-17212912,
17212996-17213160,17213383-17213476,17213572-17213636,
17213841-17213969
Length = 484
Score = 35.5 bits (78), Expect = 0.041
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +1
Query: 349 QLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGIIFA 528
Q QAT E + L +GW H+HP T + S +DL YQ M + I+ A
Sbjct: 417 QKCQATNEEEIFEVQDKGSLFTLGWIHTHPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMA 476
>04_03_0108 -
11340504-11340680,11341580-11341665,11341784-11341827,
11342339-11342428,11343762-11343928,11343986-11344010,
11344636-11344797,11345376-11345422,11345926-11345985,
11346094-11346465
Length = 409
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 205 HALSTEKEEIMGLLIGEVHDNGAL-VSIVSSVILRRLDKKPDRVEISEEQLVQATVRAEE 381
HAL + GLL+G + D A ++VS L P + + + T+ +
Sbjct: 20 HALKHPAAAVNGLLVGRLLDGAASPAAVVSIADAVPLSHHPHHLPLLPTLELALTLVEDH 79
Query: 382 LAAEVGQPLRVVGWYHSH 435
AA Q L VVG+YH++
Sbjct: 80 FAA---QGLAVVGYYHAN 94
>09_06_0187 +
21433842-21433887,21434504-21435246,21435437-21435484,
21435929-21436814,21436967-21437056,21437543-21438417
Length = 895
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +1
Query: 40 LGTMFNSKNLVILSV*SMLKILKSVTFNRITITNINFEMLQKVRLSSDVALVCMQHALST 219
L T++ K+L SV S + SVT N++FEM Q RLSS++ + H+ +
Sbjct: 653 LNTLY--KDLTNTSVSSDNNLSGSVTVPLANQNNLDFEMHQHHRLSSNIPSTSLSHSSCS 710
Query: 220 EKEE 231
+ +
Sbjct: 711 QSSD 714
>01_03_0156 +
13279354-13279479,13279722-13279790,13280102-13280272,
13280358-13280464,13281332-13281437,13281540-13281586,
13283429-13283747,13283917-13284006,13284095-13284157,
13284303-13284377,13285379-13285441,13286677-13286700,
13286926-13286978,13287687-13287861
Length = 495
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 406 LRVVGWYHSHPHITVWPSHVDLATQSMYQRMDA 504
L +GW H+HP + + S +DL YQ + A
Sbjct: 384 LFTLGWIHTHPTQSCFLSSIDLHNHYSYQNIIA 416
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +1
Query: 280 SIVSSVILRRLDKKPDRVEISEEQLVQATVRAEELAAEVGQPLRVV 417
S S+ +LRRL + V SE +L+Q + EEL E + LRV+
Sbjct: 1005 SSTSASLLRRLWIRKSDVSSSEWKLLQHRPKLEELTIEYCEMLRVL 1050
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,715,976
Number of Sequences: 37544
Number of extensions: 252961
Number of successful extensions: 573
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -