Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29c09
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 66 3e-11
U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 60 2e-09
AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome re... 58 6e-09
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 2.4
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 29 2.4
L16685-2|AAY43982.1| 262|Caenorhabditis elegans Hypothetical pr... 28 5.7
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 28 5.7
Z81594-3|CAB76410.2| 441|Caenorhabditis elegans Hypothetical pr... 27 9.9
U58760-9|AAK31465.1| 654|Caenorhabditis elegans Dishevelled rel... 27 9.9
>U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome
subunit protein 5 protein.
Length = 368
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/147 (30%), Positives = 69/147 (46%)
Frame = +1
Query: 160 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 339
+++++S+ L HA EIMGLL G + N I+ V ++ RV
Sbjct: 54 KQIKISAIALLKMTMHAKRGGNLEIMGLLQGRIDANSF---IILDVFALPVEGTETRVNA 110
Query: 340 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGI 519
+ TV +E E G+ +VVGWYHSHP W S +D++TQ++ Q+ +V I
Sbjct: 111 QAQAYEYMTVYSEMCDTE-GRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAI 169
Query: 520 IFAVFLTDQSTKAPSVQITCFQSINEG 600
+ T A V I F++ EG
Sbjct: 170 VIDPLRT---MSAGKVDIGAFRTYPEG 193
>U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical
protein F37A4.5 protein.
Length = 319
Score = 59.7 bits (138), Expect = 2e-09
Identities = 44/145 (30%), Positives = 70/145 (48%)
Frame = +1
Query: 160 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 339
+ V +SS L ++HA S E+MGL++G+ D+ + V+ V + + V +
Sbjct: 27 ETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTIN--VTDVFA--MPQSGTSVTV 82
Query: 340 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGI 519
V T + +L VG+ VVGWYHSHP W S VD+ TQ ++ + V +
Sbjct: 83 ESVDPVYQT-KHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAV 141
Query: 520 IFAVFLTDQSTKAPSVQITCFQSIN 594
+ QS K V + F+S+N
Sbjct: 142 VVDPI---QSVKG-KVMLDAFRSVN 162
>AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 11 protein.
Length = 312
Score = 58.0 bits (134), Expect = 6e-09
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
Frame = +1
Query: 160 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 339
+ V +SS L ++H + E+MGL++GE D+ V+ + + + + V +
Sbjct: 31 ETVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYT----VNVIDVFAMPQSGTGVSV 86
Query: 340 SE-EQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVG 516
+ + QA + ++ + G+P VVGWYHSHP W S VD+ TQ ++ + V
Sbjct: 87 EAVDPVFQAKML--DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVA 144
Query: 517 IIFAVFLTDQSTKAPSVQITCFQSIN 594
++ QS K V I F++IN
Sbjct: 145 VVVDPI---QSVKG-KVVIDAFRTIN 166
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = -1
Query: 398 PTSAANSS----ALTVA*TSCSSDISTRSGFLSKRRSI----TDDTIETSAPLS 261
PTS ANSS A++ T D T S SKR+++ TDDT +S PLS
Sbjct: 8 PTSKANSSPEGKAMSPMKTQLLDDQQTPSSSSSKRKNLRKPSTDDTPSSSEPLS 61
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 322 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 444
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1402 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1442
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 322 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 444
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 322 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 444
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 322 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 444
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 322 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 444
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1402 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1442
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 322 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 444
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 322 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 444
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 322 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 444
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 322 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 444
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1494 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1534
>L16685-2|AAY43982.1| 262|Caenorhabditis elegans Hypothetical
protein ZC21.9 protein.
Length = 262
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 347 SSDISTRSGFLSKRRSITDDTIETSAPLS*TSPISKPMISSFSVDNACCIQTKATSD 177
SSD S R L ++ D +T++PLS S S P+++S IQT A S+
Sbjct: 84 SSD-SIRQETLRLNQAFFDSLTQTASPLSMQSSQSDPILTSQMDSQPIHIQTNAQSE 139
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 398 PTSAANSSALTVA*TSCSSDISTRSGFLSKRRSITDDTIETSAPLS*TSPISKPM 234
P S+A A + ++ +T SG+ SKR + D+ + T AP + +P P+
Sbjct: 126 PAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAYGDEQV-TPAPAAAPAPADAPV 179
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 398 PTSAANSSALTVA*TSCSSDISTRSGFLSKRRSITDDTIETSAPLS*TSPISKPM 234
P S+A A + ++ +T SG+ SKR + D+ + T AP + +P P+
Sbjct: 454 PAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAYGDEQV-TPAPAAAPAPADAPV 507
>Z81594-3|CAB76410.2| 441|Caenorhabditis elegans Hypothetical
protein T20F10.5 protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 172 LSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKP 324
LSS VAL+ + H T + E+ +I + + L+ +++S++L D P
Sbjct: 143 LSSGVALIMLSHGADTHRLEVHS-IISSLFTHCLLLQLIASLLLSE-DSNP 191
>U58760-9|AAK31465.1| 654|Caenorhabditis elegans Dishevelled
related protein 2 protein.
Length = 654
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +1
Query: 109 SVTFNRITITNINFEMLQKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGAL 276
S +F+ IT +++ E++ VRL+ + + M + T GL +G++ D GA+
Sbjct: 345 SSSFSSITESSMGLEVIT-VRLNLETIPLGMTPSGHTNARGDAGLYVGDIQDRGAV 399
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,642,220
Number of Sequences: 27780
Number of extensions: 256597
Number of successful extensions: 668
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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