Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29c05
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.1  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   7.1  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   7.1  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 682 RCVCDDGYVSDYNADTETPYC 620
           RC C DGY   Y   TE   C
Sbjct: 169 RCHCSDGYSGSY-CQTEINEC 188


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 118 LGSTEI-VPAGTGVMKISVSYDTTLKDMRLPFSIFRIFRL 2
           LGS  + VP GT    +  +   T++  R P+S F+   L
Sbjct: 219 LGSMGVSVPCGTSGNPLEWTGQVTVRKKRKPYSKFQTLEL 258


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 574  PRAPCADGQVRLDHPGLNDFYR 509
            P  PC  GQ   D    N +YR
Sbjct: 1099 PSQPCEPGQYVPDPHNCNAYYR 1120


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 265 VHMLRLRRVDYK 230
           VH+ R RRV+YK
Sbjct: 93  VHVFRKRRVNYK 104


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 119 QRVQNRLIPFVTELV 163
           +R ++ LIPF+TE +
Sbjct: 47  ERTRSELIPFLTETI 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,553
Number of Sequences: 336
Number of extensions: 3534
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)