Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29c05
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 27 0.22
11_06_0485 + 24133312-24133585,24136352-24136492,24136593-241367... 29 2.6
07_03_0980 + 23107348-23107420,23107876-23108025,23108875-231090... 29 2.6
03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345 29 2.6
08_01_0577 + 5132876-5132894,5134352-5134845,5134937-5135162,513... 29 4.5
07_01_1153 - 10842259-10842390,10843348-10845315 29 4.5
02_04_0583 + 24078766-24079800,24080585-24081643 29 4.5
10_08_0819 - 20803992-20804493,20804578-20804759,20804849-208049... 28 7.9
08_02_1257 - 25646029-25646054,25646139-25646236,25646609-256467... 28 7.9
>07_01_0552 +
4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 26.6 bits (56), Expect(2) = 0.22
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 270 LACTC*GCVVWITNISGAAETTPSFPTRMW 181
L C C + W+ N G E +F R+W
Sbjct: 581 LECYCGRVLPWLFNFGGVNELALNFAMRLW 610
Score = 25.0 bits (52), Expect(2) = 0.22
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 453 LAGNAQGDAYFTIQSTKVSTESTDAIVRSLTCYC 352
L+ +A D T+ S + ++ +V L CYC
Sbjct: 552 LSASAYEDVLLTLTSVNGRVKCSEYVVNLLECYC 585
>11_06_0485 +
24133312-24133585,24136352-24136492,24136593-24136742,
24136837-24136955,24137062-24137146,24137218-24137264,
24137422-24137520
Length = 304
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 252 GCVVWITNISGAAETT 205
GCVVWIT +SG+ ++T
Sbjct: 127 GCVVWITGLSGSGKST 142
>07_03_0980 +
23107348-23107420,23107876-23108025,23108875-23109024,
23109166-23109284,23109384-23109468,23109927-23109973,
23110511-23110609
Length = 240
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 252 GCVVWITNISGAAETT 205
GCVVWIT +SG+ ++T
Sbjct: 63 GCVVWITGLSGSGKST 78
>03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345
Length = 122
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 252 GCVVWITNISGAAETTPS 199
GCV+WIT +SG+ PS
Sbjct: 98 GCVIWITGLSGSVRFLPS 115
>08_01_0577 +
5132876-5132894,5134352-5134845,5134937-5135162,
5135695-5135917,5136315-5136528,5136769-5136806,
5136977-5137142
Length = 459
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 186 SASENSVWSLRPQKYL*STRRNLNMCTLNGRKQA 287
SAS +SV SL+P K++ S+ R L + L+G + A
Sbjct: 31 SASVSSVSSLKPSKFVVSSLRPLYLAPLDGPRAA 64
>07_01_1153 - 10842259-10842390,10843348-10845315
Length = 699
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 146 FVTELVGI-RLKHHIRVGKLGVVSAAPEIFVIHTTQP 253
FV E+V I RL+HH V LG E+F+++ P
Sbjct: 390 FVAEIVSIGRLQHHNLVQLLGYCRRRGELFLVYDYMP 426
>02_04_0583 + 24078766-24079800,24080585-24081643
Length = 697
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 148 ERYQAILYPLLGSTEIVPAGTGVMKISVSYDTTLKD 41
E Y ++YPLL + IVP ++ S+ T++D
Sbjct: 327 ELYLKVIYPLLEGSTIVPYVAEILLADESFGATIRD 362
>10_08_0819 -
20803992-20804493,20804578-20804759,20804849-20804911,
20805736-20805846,20806668-20806721,20807040-20807075,
20807356-20807400,20807473-20807562,20807863-20808195
Length = 471
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 478 IDPCSVDPISGQRTRGRLFHHPIDKGVNGINGCNCPVSDLLLPVF 344
I PC D + G R R L + + GV CN P SDLL+ F
Sbjct: 292 IGPCIWD-VDGSRNRPDLLNGMENHGVCISLACNPPSSDLLVASF 335
>08_02_1257 -
25646029-25646054,25646139-25646236,25646609-25646700,
25646786-25646893,25647212-25647346,25647648-25647752,
25647951-25648088,25648865-25648963,25649079-25649195,
25649446-25649610,25649955-25650014,25650395-25650559,
25650636-25650746,25651220-25651333,25651466-25651531,
25651857-25651994,25652303-25652386,25652468-25652510,
25652621-25652676,25652772-25652880,25652944-25653026,
25653127-25653210,25653383-25653454,25653557-25653634,
25653717-25653800,25653892-25653962,25654095-25654164,
25654314-25654403,25654500-25654661,25654702-25654817,
25654946-25654988,25655069-25655185,25655897-25656046
Length = 1082
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Frame = -1
Query: 477 STLVRWTRLAGNAQGDAYFTIQSTKVSTESTDAIVRSLTC----YCPCLIDTPPKRA*LD 310
S+ W L G+ Q + K S E D SL C YCPC I+ PK D
Sbjct: 628 SSCKSWLALDGSVQPMSAEKYNECKKSIE--DMATSSLRCVAFAYCPCEIERIPKEDIAD 685
Query: 309 -KATAPSRTLAC 277
K TL C
Sbjct: 686 WKLPEDDLTLLC 697
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,034,788
Number of Sequences: 37544
Number of extensions: 414338
Number of successful extensions: 1001
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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