Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29c05
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68880-1|CAA93098.1| 652|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical pr... 31 0.77
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 31 1.0
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 31 1.0
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 31 1.0
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 31 1.0
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 31 1.0
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 31 1.0
Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z78418-4|CAB01698.1| 710|Caenorhabditis elegans Hypothetical pr... 28 7.1
X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic int... 28 7.1
U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate fi... 28 7.1
U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate fi... 28 7.1
U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical p... 28 7.1
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 28 7.1
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 28 7.1
Z92828-6|CAB07338.2| 393|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z83115-2|CAE17889.1| 373|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z68880-1|CAA93098.1| 652|Caenorhabditis elegans Hypothetical
protein T14G10.1 protein.
Length = 652
Score = 31.5 bits (68), Expect = 0.58
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 252 GCVVWITNISGAAETTPSF 196
GC +W T +SGA +TT SF
Sbjct: 56 GCTIWFTGLSGAGKTTISF 74
>Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical
protein K01C8.5 protein.
Length = 707
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 164 QPTQSRTVSSDFVPVARFNRNRTSWHGC 81
QP+ R+ SD +PVARFN N W+ C
Sbjct: 43 QPSIRRSSGSDLMPVARFN-NFKRWNSC 69
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 158 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 33
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 603 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 647
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 158 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 33
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 572 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 616
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 158 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 33
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 512 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 556
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 158 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 33
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 512 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 556
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 158 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 33
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 603 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 647
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 158 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 33
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 572 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 616
>Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical
protein W09D6.1b protein.
Length = 714
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 257 VKVASCGLQIFLGPQRPHRVFRRGCGVSSECQP 159
V + G+ I + PQ + ++R CGV EC+P
Sbjct: 556 VCASHAGIVIAVNPQTGNLIWRAECGVRFECKP 588
>Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical
protein W09D6.1a protein.
Length = 707
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 257 VKVASCGLQIFLGPQRPHRVFRRGCGVSSECQP 159
V + G+ I + PQ + ++R CGV EC+P
Sbjct: 556 VCASHAGIVIAVNPQTGNLIWRAECGVRFECKP 588
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
protein B0393.5 protein.
Length = 1106
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Frame = -3
Query: 679 CVCDDGYVSDYNADTETPYCRPRTVRDVMHDESFFPRAPCADGQVRLDHPGLNDFYR--- 509
C+C DGY D P R V + + ++ P + C + Q + L F R
Sbjct: 472 CLCKDGYEGD-------PSSECRDVNECKNPDACGPNSQCTNTQGGYECECLAGFERIAE 524
Query: 508 -RHFRLEDICVIDPCSVDPISGQRTRG 431
H D C ++PC I TRG
Sbjct: 525 GAHCTDRDECAVEPCHPAAIC-SNTRG 550
>Z78418-4|CAB01698.1| 710|Caenorhabditis elegans Hypothetical
protein F25D7.5 protein.
Length = 710
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 214 CGPRNICNPHDATLTCAR*TVASKRSRRCGRFV*SC 321
CG R P T++CA VA K + FV SC
Sbjct: 70 CGTRGNIMPSPTTISCAAEGVAQKLANTTSDFVSSC 105
>X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic
intermediate filamentprotein protein.
Length = 543
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 458 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 568
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate
filament, b protein2, isoform c protein.
Length = 526
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 458 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 568
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate
filament, b protein2, isoform a protein.
Length = 543
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 458 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 568
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical
protein K05F1.10 protein.
Length = 140
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 634 ETPYCRPRTVRDVMHDESFFPRAPCADGQVR 542
E + P + + H + +FPR C DG VR
Sbjct: 73 ENLFSPPHCLNHLHHAKCYFPRCVCNDGYVR 103
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Frame = -3
Query: 382 CNCPVSDLLLPVFNRHTAETGMIRQSDRTVANACLR--PFSVHMLRLRRVDYKYFWGRRD 209
C+C + FN H+ ETG + + +AN R P S H+ + F G
Sbjct: 1772 CHCTQAWFNYMAFNNHSEETGFPQFKNVDLANDYRRDFPLSRHLNERNALSMSQF-GNAK 1830
Query: 208 HTEFSDADVVFQANANQLSHE 146
H + + Q N HE
Sbjct: 1831 HGSANHSHGQAQPNKRTFRHE 1851
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Frame = -3
Query: 382 CNCPVSDLLLPVFNRHTAETGMIRQSDRTVANACLR--PFSVHMLRLRRVDYKYFWGRRD 209
C+C + FN H+ ETG + + +AN R P S H+ + F G
Sbjct: 1772 CHCTQAWFNYMAFNNHSEETGFPQFKNVDLANDYRRDFPLSRHLNERNALSMSQF-GNAK 1830
Query: 208 HTEFSDADVVFQANANQLSHE 146
H + + Q N HE
Sbjct: 1831 HGSANHSHGQAQPNKRTFRHE 1851
>Z92828-6|CAB07338.2| 393|Caenorhabditis elegans Hypothetical
protein C37A5.7 protein.
Length = 393
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 301 RTVANACLRPFSVHMLRLRRVDYKYFWG 218
R + + RP+SVH+ +L R+ +YF G
Sbjct: 300 RVIRSERFRPYSVHLWQLARIFRQYFDG 327
>Z83115-2|CAE17889.1| 373|Caenorhabditis elegans Hypothetical
protein K11D2.5 protein.
Length = 373
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -3
Query: 388 NGCNCPVSDLLLPVFNRHTAETGMIRQSDRTVANACLRPFSVHMLRLRRVD 236
N NC LLP+F R+ + RQ T ++ LR F+ + L R VD
Sbjct: 19 NAKNCQKMRRLLPIFRRNLRISAFSRQC--TTSDDTLRTFAPNALMDRIVD 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,927,146
Number of Sequences: 27780
Number of extensions: 352774
Number of successful extensions: 880
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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