Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29c03
         (689 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.8  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   7.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.2  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   7.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.5  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 138 LGSTEI-VPAGTGVMKISVSYDTTLKDMRLPFSIFRIFRLKE 260
           LGS  + VP GT    +  +   T++  R P+S F+   L++
Sbjct: 219 LGSMGVSVPCGTSGNPLEWTGQVTVRKKRKPYSKFQTLELEK 260


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 382 LVNVSAVHTKNPPCRLMHASGSAS 311
           L  VSA+  KNP  ++M + G A+
Sbjct: 82  LKRVSALKEKNPNLKVMLSVGGAT 105


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 365 GPHEKSTVSPDARIGIG 315
           GP   +  +PD+R+G G
Sbjct: 137 GPVRPAACTPDSRVGYG 153


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 137 QRVQNRLIPFVTELV 93
           +R ++ LIPF+TE +
Sbjct: 47  ERTRSELIPFLTETI 61


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 211 KICDYHFLFLGYLDLKKV 264
           K+ DYH   LG+    KV
Sbjct: 131 KLVDYHHQLLGHFGATKV 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,863
Number of Sequences: 336
Number of extensions: 4099
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)