Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29b23
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    29   0.34 
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    27   1.8  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    26   4.2  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   5.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   5.5  

>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 374 SSHSVLNFLPLPPVPSTRLASLPNYTPPHHNDPL 475
           +SHS L F P P  PS   AS PN   P+ N P+
Sbjct: 30  ASHSQL-FTPCPVPPSFPKASKPNSNQPYPNGPV 62


>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 240 FITKVCLCISNCFINLSGF 184
           F+TK+ L ISN +++LSG+
Sbjct: 15  FLTKLLLPISNAYVHLSGY 33


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 305 NDAAKPCFVLSFKELLIMLDCGL-SSHSVLNFLP 403
           N+  + C V+ +K   +MLD G+  +++ L+ LP
Sbjct: 46  NEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALP 79


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
 Frame = +3

Query: 363 IVGCH--PTLCST----SYRCLQCLALDSHPCLITHH 455
           I  CH  P  CST    + R ++CL+  S  CL  HH
Sbjct: 28  IFSCHFVPRRCSTCKRINKRSIRCLSCHSVGCLWGHH 64


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 450 HHHITMIHSWKGN*RSV 500
           HH+I  +H+WK + RS+
Sbjct: 315 HHYIASLHAWKPDLRSL 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,316
Number of Sequences: 5004
Number of extensions: 43082
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)