Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29b23
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0506 + 3701448-3701591,3702097-3702400,3702894-3703012,370... 32 0.34
02_05_0860 - 32296743-32296769,32297328-32297357,32298432-322985... 30 1.0
06_03_1358 - 29548440-29549315 30 1.4
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 29 1.8
12_01_0436 - 3436886-3437559,3438738-3438924 28 4.2
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 28 4.2
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383... 28 4.2
02_01_0098 + 717857-719252,719453-719511 28 4.2
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 28 5.6
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 27 7.4
09_02_0082 - 4060018-4061604 27 9.8
04_03_0904 + 20717005-20718087 27 9.8
03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209... 27 9.8
01_01_0440 - 3302523-3303092 27 9.8
>01_01_0506 +
3701448-3701591,3702097-3702400,3702894-3703012,
3703118-3703723
Length = 390
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 371 LSSHSVLNFLPLPPVPSTRLASLPNYTPPHHNDPLL 478
L +H + +F P+ P+P+T SL PP + P L
Sbjct: 182 LLNHHISSFFPVTPLPNTNHGSLAPLQPPRNEQPPL 217
>02_05_0860 -
32296743-32296769,32297328-32297357,32298432-32298503,
32298967-32299812
Length = 324
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 401 PLPPVPSTRLASLPNYTPPHHNDPLLEGE 487
P+PP P+ A++P PP P+L G+
Sbjct: 152 PVPPAPTPTAAAVPPPPPPQQQTPMLFGQ 180
>06_03_1358 - 29548440-29549315
Length = 291
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 401 PLPPVPSTRLASLPNYTPPHHNDP 472
PLPP P + PPHH DP
Sbjct: 63 PLPPPPPAKSLGRSATAPPHHTDP 86
>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +2
Query: 320 PCFVLSFKELLIMLDCGLSSHSVLNFLPLPPVPSTRLASLPNYTPPHHNDPLLEG 484
PC V S +CG + H+ N +PLPP P L P P H P G
Sbjct: 1132 PCVVSSHPPA--PYNCGYAGHA--NQMPLPPPPPPPLPPPPPVAPFHPPGPHFSG 1182
>12_01_0436 - 3436886-3437559,3438738-3438924
Length = 286
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 377 SHSVLNF---LPLPPVPSTRLASLPNYTPPHHNDPLLEGE 487
S + LNF LPP P+T A+ PP D LLE +
Sbjct: 150 SRAKLNFPEHATLPPPPTTTTAAAHRCPPPPRTDALLESQ 189
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 407 PPVPSTRLASLPNYTPPHHNDPLLEGELKE 496
PP+PS+ A P+ PP + EGE +E
Sbjct: 32 PPMPSSADADAPSSPPPPQQEAAAEGEEEE 61
>04_04_1634 +
34937087-34937198,34937652-34937790,34938263-34938334,
34938414-34938546,34938591-34938730,34939478-34939585,
34939650-34939720,34940297-34940545,34940618-34940823,
34940894-34941026,34941099-34941101,34941136-34941293,
34941420-34941683,34941869-34942114
Length = 677
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 372 SPQSNIMRSSLKDNTKQGFAASLLKQ*SFIISLYI 268
SPQ +++ L +++ +GF A L Q SF+ LY+
Sbjct: 76 SPQGSVISLKLSNSSLKGFIAPELGQLSFLQELYL 110
>02_01_0098 + 717857-719252,719453-719511
Length = 484
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 350 LIMLDCGLSSHSVLNFLPLPPVPSTRLASLPNYTPPHHND--PLLEGELKECCGRVFVDS 523
+++ D + H VL LPLP + S P H+ D +++ + C V +++
Sbjct: 250 ILLCDDVIDQHPVLRDLPLPKPARSNRKSFCRGPPHHYRDITVVVQDSVPTCIKYVEMET 309
Query: 524 MPEFCPP 544
P PP
Sbjct: 310 RPGDRPP 316
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 417 GTGGSGRKLSTEWDDSPQSNIMRSSLKDNTKQGFAASLLK 298
G GG GRK + W DS + + ++ +G A+ L+
Sbjct: 170 GGGGGGRKAGSSWADSTSGSRGKGKAAEHPARGATATSLE 209
>12_01_1080 +
11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 463 VMWWCVIRQGCESSARH 413
V+ +C R+GCES+ARH
Sbjct: 770 VLLFCSSRKGCESTARH 786
>09_02_0082 - 4060018-4061604
Length = 528
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 389 LNFLPLPPVPSTRLASLPNYTPP 457
L FLP PPVP+ + + P PP
Sbjct: 50 LLFLPAPPVPAPLVHAPPTLAPP 72
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 401 PLPPVPSTRLASLPN-YTPPHHNDPLLEGELKECCGRVFVDSMPEFCPP 544
P P P+ + P + PPHH++P E KE + P PP
Sbjct: 35 PTPVKPAPKPEKPPKEHKPPHHHEPKPEKPPKEHKPPAYTPPKPTPTPP 83
>03_03_0248 +
15819264-15819460,15820691-15820729,15820797-15820936,
15821150-15821225,15822866-15823160,15823236-15823342,
15823442-15823489,15823568-15823853,15823954-15823961,
15824083-15824184,15824426-15824553,15824664-15824741,
15825047-15825145,15825247-15825302
Length = 552
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 414 TGGSGRKLSTEWDDSPQSNIMRSSLKDNTKQ 322
TGG G+ + TE ++PQ + R K KQ
Sbjct: 445 TGGPGKTVRTEKKETPQERLKRIMSKQLNKQ 475
>01_01_0440 - 3302523-3303092
Length = 189
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 338 FKELLIMLDCGLSSHSVLNFLPLPPVPSTRLASLPNYTPPHHNDPLL 478
F L I+ +++ + N+ P PS YTPP H+D LL
Sbjct: 4 FLPLAILFASLMAAGATANYGYTTPSPSPPPPPPQQYTPPAHSDKLL 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,297,506
Number of Sequences: 37544
Number of extensions: 260450
Number of successful extensions: 829
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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