Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29b23
         (546 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC025267-1|AAH25267.1|  658|Homo sapiens integrator complex subu...   104   2e-22
AK001733-1|BAA91867.1|  658|Homo sapiens protein ( Homo sapiens ...   104   2e-22
BC117129-1|AAI17130.1| 1030|Homo sapiens MMS19 nucleotide excisi...    29   8.0  
BC080532-1|AAH80532.1|  871|Homo sapiens MMS19 protein protein.        29   8.0  
BC006575-1|AAH06575.2|  803|Homo sapiens MMS19L protein protein.       29   8.0  
BC002692-1|AAH02692.1|  692|Homo sapiens Unknown (protein for IM...    29   8.0  
AY974244-1|AAX59033.1| 1030|Homo sapiens MMS19-like (MET18 homol...    29   8.0  
AL359388-1|CAI14189.1| 1030|Homo sapiens MMS19-like (MET18 homol...    29   8.0  
AL355490-23|CAI40792.1|  885|Homo sapiens MMS19-like (MET18 homo...    29   8.0  
AL355490-1|CAI40770.1| 1030|Homo sapiens MMS19-like (MET18 homol...    29   8.0  
AK056581-1|BAB71223.1|  375|Homo sapiens protein ( Homo sapiens ...    29   8.0  
AK027710-1|BAB55315.1|  774|Homo sapiens protein ( Homo sapiens ...    29   8.0  
AJ306408-1|CAC29239.1| 1030|Homo sapiens MMS19 protein protein.        29   8.0  
AF357881-1|AAK70402.1| 1030|Homo sapiens transcriptional coactiv...    29   8.0  
AF319947-1|AAK52668.1| 1030|Homo sapiens MMS19 protein.                29   8.0  
AF007151-1|AAC19154.1|  341|Homo sapiens unknown protein.              29   8.0  

>BC025267-1|AAH25267.1|  658|Homo sapiens integrator complex subunit
           9 protein.
          Length = 658

 Score =  104 bits (249), Expect = 2e-22
 Identities = 52/87 (59%), Positives = 58/87 (66%)
 Frame = +2

Query: 284 MKLYCLSNDAAKPCFVLSFKELLIMLDCGLSSHSVLNFLPLPPVPSTRLASLPNYTPPHH 463
           MKLYCLS     PC VL FK   IMLDCGL   S LNFLPLP V S RL++LP ++    
Sbjct: 1   MKLYCLSGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDG 60

Query: 464 NDPLLEGELKECCGRVFVDSMPEFCPP 544
           N   L+ ELKEC G VFVDS+PEFC P
Sbjct: 61  N-AFLDKELKECSGHVFVDSVPEFCLP 86


>AK001733-1|BAA91867.1|  658|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10871 fis, clone NT2RP4001696, weakly similar to
           CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
           SUBUNIT. ).
          Length = 658

 Score =  104 bits (249), Expect = 2e-22
 Identities = 52/87 (59%), Positives = 58/87 (66%)
 Frame = +2

Query: 284 MKLYCLSNDAAKPCFVLSFKELLIMLDCGLSSHSVLNFLPLPPVPSTRLASLPNYTPPHH 463
           MKLYCLS     PC VL FK   IMLDCGL   S LNFLPLP V S RL++LP ++    
Sbjct: 1   MKLYCLSGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDG 60

Query: 464 NDPLLEGELKECCGRVFVDSMPEFCPP 544
           N   L+ ELKEC G VFVDS+PEFC P
Sbjct: 61  N-AFLDKELKECSGHVFVDSVPEFCLP 86


>BC117129-1|AAI17130.1| 1030|Homo sapiens MMS19 nucleotide excision
           repair homolog (S. cerevisiae) protein.
          Length = 1030

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 543 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 591


>BC080532-1|AAH80532.1|  871|Homo sapiens MMS19 protein protein.
          Length = 871

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 384 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 432


>BC006575-1|AAH06575.2|  803|Homo sapiens MMS19L protein protein.
          Length = 803

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 316 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 364


>BC002692-1|AAH02692.1|  692|Homo sapiens Unknown (protein for
           IMAGE:3605877) protein.
          Length = 692

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 205 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 253


>AY974244-1|AAX59033.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
           S. cerevisiae) protein.
          Length = 1030

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 543 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 591


>AL359388-1|CAI14189.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
           S. cerevisiae) protein.
          Length = 1030

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 543 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 591


>AL355490-23|CAI40792.1|  885|Homo sapiens MMS19-like (MET18
           homolog, S. cerevisiae) protein.
          Length = 885

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 398 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 446


>AL355490-1|CAI40770.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
           S. cerevisiae) protein.
          Length = 1030

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 543 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 591


>AK056581-1|BAB71223.1|  375|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32019 fis, clone NTONG1000098. ).
          Length = 375

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 179 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 227


>AK027710-1|BAB55315.1|  774|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14804 fis, clone NT2RP4001638, weakly similar to
           DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19. ).
          Length = 774

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 287 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 335


>AJ306408-1|CAC29239.1| 1030|Homo sapiens MMS19 protein protein.
          Length = 1030

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 543 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 591


>AF357881-1|AAK70402.1| 1030|Homo sapiens transcriptional
           coactivator MMS19 protein.
          Length = 1030

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 543 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 591


>AF319947-1|AAK52668.1| 1030|Homo sapiens MMS19 protein.
          Length = 1030

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 543 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 591


>AF007151-1|AAC19154.1|  341|Homo sapiens unknown protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 GCHPTLCSTSYRCLQCL-ALDSHPCLITHH-HITMIHSWKGN*RSVAAE 509
           G  PT CS    CLQ L A+ +HP ++     + + H W+ N  ++ A+
Sbjct: 105 GDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQ 153


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,761,994
Number of Sequences: 237096
Number of extensions: 1479283
Number of successful extensions: 3260
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3258
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)