Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29b23
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81527-11|CAI91173.1|  390|Caenorhabditis elegans Hypothetical p...    31   0.72 
U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical p...    31   0.72 
Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL023828-15|CAA19460.1|  411|Caenorhabditis elegans Hypothetical...    29   2.9  
Z66561-5|CAA91459.1|  102|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>Z81527-11|CAI91173.1|  390|Caenorhabditis elegans Hypothetical
           protein F35E12.9b protein.
          Length = 390

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +2

Query: 353 IMLDCGLSSHSVLNFLPLPPVPSTRLASLPNYTPPHHNDPLLEGELKECCGRVFVDSMP 529
           I +DC    ++ L F  + PV +    +    TP H  + L++ ++     + F   MP
Sbjct: 225 ICVDCSTFYYTQLRFDSMTPVSNRAYVTFQGMTPTHKKEKLIKYDMMTVTDKYFPQMMP 283


>U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical
           protein F19F10.12 protein.
          Length = 646

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +2

Query: 311 AAKPCFVLSFKELLIMLDCGLSSHSVLNFLPLPPVPSTRLASLPNYTPPHHNDPLLEGEL 490
           A KPCF+L +    I++D  +      +FLP     S R+ + P         P     L
Sbjct: 10  AQKPCFLLEWPNARILMDTPIDFTPFFSFLP-HVYQSPRIKNAP--IAKKFQIPY----L 62

Query: 491 KECCGRVFVDSMPE 532
           KE   RV+V+S PE
Sbjct: 63  KELGNRVYVESPPE 76


>Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical
           protein F36G9.2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 381 WDDSPQSNIMRSSLKD-NTKQGFAASLLKQ*SFIISLYIIFRICGRILFITKVC 223
           WD S QSNI++ ++K      GF A   +   FI+SL II+       F++ +C
Sbjct: 157 WDPSDQSNILKKTMKQVPCIPGFIA---EYPYFILSLNIIYCTTVVGFFVSDIC 207


>AL023828-15|CAA19460.1|  411|Caenorhabditis elegans Hypothetical
           protein Y17G7B.13 protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 440 PNYTPPHHNDPLLEGELKECCGRVFVDSMPEFCP 541
           PN   PH N+ +L+  +++ CG+     M +FCP
Sbjct: 184 PNVDVPHCNNCILQ--IEKSCGQSHFSEMYDFCP 215


>Z66561-5|CAA91459.1|  102|Caenorhabditis elegans Hypothetical
           protein F08G12.8 protein.
          Length = 102

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +2

Query: 278 LIMKLYCLSNDAAKPCFVLSFKELLIMLDCGLSSHSVLNFLPLPPVPSTRLASLPNYTPP 457
           L+    C+S++  K  F+L     ++        H + N LP P  P  R+    NY P 
Sbjct: 24  LVKVFQCVSSNV-KMRFILGLLIAIVAFVASSPIHGIWNNLPAP--PQKRVYGFYNYLPK 80

Query: 458 HHND 469
             +D
Sbjct: 81  EEDD 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,861,275
Number of Sequences: 27780
Number of extensions: 241979
Number of successful extensions: 714
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)