Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29b22
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.24 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.72 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   8.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 65  KNIDIN*K-RKVNVLSSNCKKGCLNKIWLY 151
           +N DI  K +KVNV    C KG L K  LY
Sbjct: 593 QNFDIKDKNKKVNVAGCRCVKGILLKSGLY 622


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = -1

Query: 612 QHHARVHHGGHLGLPGAQGHH------QRDGRAQRHRAHPRTVRP 496
           +HH   +H  HL     Q HH      Q+  + Q+ R   R +RP
Sbjct: 140 RHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLRP 184


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 624 LHGAQHHARVHHGGHL 577
           +H A HHA + H G L
Sbjct: 281 VHHANHHAILGHSGFL 296


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 609 HHARVHHGGHLGLPGAQGHHQRDGRAQRHRAH 514
           HH    H  H  +   QG HQ   + Q  +AH
Sbjct: 169 HHQM--HTQHPHMQPQQGQHQSQAQQQHLQAH 198


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 386 FTRTCLKYNKCNILTRLSYSSS 321
           + +TC+      +LT L YS+S
Sbjct: 297 YCKTCISGRAFQVLTWLGYSNS 318


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 505 CPPTPRQTP 479
           C P PRQTP
Sbjct: 392 CSPPPRQTP 400


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 247 RCIIRSQFWCSTERRFKKVYEY 312
           RC+I  + +CS       +Y Y
Sbjct: 37  RCVICERVYCSRNSLMTHIYTY 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,107
Number of Sequences: 438
Number of extensions: 3897
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)