Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29b09
         (761 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    26   1.1  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   2.5  
AY146734-1|AAO12094.1|  176|Anopheles gambiae odorant-binding pr...    25   3.4  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    24   5.9  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   5.9  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 477 NDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDA-ETARQDCENARRETAQL 653
           ND+  K   +TQ L+    +LA A+++L   A + I+  RD+     +      RE A +
Sbjct: 470 NDIWKKETAVTQTLSGYKEELARADQALRSMAGKPILNGRDSVRKVLESFLQRGREYADI 529

Query: 654 AN 659
           AN
Sbjct: 530 AN 531


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 594  RDAETARQDCENARRETAQL 653
            RDA++  + CE A+R TAQL
Sbjct: 1051 RDADSWSRICEGAKRITAQL 1070


>AY146734-1|AAO12094.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP24 protein.
          Length = 176

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 528 NADLAEANRSLILFANEMIVARRDAETARQDCENAR 635
           NAD  +   SL +F + +  AR +AE  R+  +NAR
Sbjct: 26  NADNFKLYSSLFVFPSPLQGARLEAEHVRRIHQNAR 61


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
           protein.
          Length = 3325

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 651 LANRMADIAQDVIAKPSNPQ 710
           L NR+ DI+++  A PS+P+
Sbjct: 408 LYNRLRDISEETSALPSHPR 427


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 594  RDAETARQDCENARRETAQLANRMAD 671
            RDAE+  + CE A+R TA L     D
Sbjct: 988  RDAESWSRICEAAKRITASLQQAWDD 1013


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,856
Number of Sequences: 2352
Number of extensions: 18373
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)