Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29b08
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.59 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.59 
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    22   4.1  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    21   9.6  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 39  LSLNPWRRICRVRCPCA-LACP 101
           L +N W  +  ++CP A L CP
Sbjct: 601 LMINQWENVTNIQCPNADLPCP 622


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 39  LSLNPWRRICRVRCPCA-LACP 101
           L +N W  +  ++CP A L CP
Sbjct: 601 LMINQWENVTNIQCPNADLPCP 622


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 606 PTPSRASFDNGYSEFCDKQQPNDYL 680
           P P +   D    E CDK+ P  Y+
Sbjct: 102 PEPEKFDPDRFLPENCDKRHPYAYI 126


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 212 LLYVNKSR*RRGARMQLITYAPRVPFKDGVIDLRLIFIGRLFSYP 346
           +L  N    + G  +Q I    +V F+D ++D  +  +G L   P
Sbjct: 10  MLLANHKNVQVGDLVQKIAQKLQVLFQDQIVDEMVTVLGDLHRKP 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,704
Number of Sequences: 336
Number of extensions: 3304
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)