Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29b08
         (692 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    27   0.74 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   3.0  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    25   3.0  
Y13592-1|CAA73920.1|  136|Anopheles gambiae voltage-gated sodium...    24   5.2  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   5.2  

>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 26.6 bits (56), Expect = 0.74
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +3

Query: 528  DIGGDTIVNNQTTMTQ---INFNASYTSAPTPSRASFDNGYSEFCDKQQPNDY 677
            D  G+ +V N+    +   +NF+       TP RASF   + +  D+   N Y
Sbjct: 1007 DETGEIVVRNRIDHEEYSWLNFSVRAADTGTPPRASFVEVFVQVLDENDNNPY 1059


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 120 KSTRSVTGMLAHTDNGPDKFYAKDLMIMSGNVSVH 16
           K T  +TG  A+   GPD     D  ++ G + +H
Sbjct: 697 KKTMEITGSEANVYYGPDYAVVVDANLIDGRLLLH 731


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 153 HILSVRKTFEAKSTRSVTG 97
           H++SV KT++ K+ RS+ G
Sbjct: 8   HVISVLKTYQDKAPRSLHG 26


>Y13592-1|CAA73920.1|  136|Anopheles gambiae voltage-gated sodium
           channel protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 498 SC*ILFQLQVDIGGDTIVNNQTTMTQINFNASYTSAPT 611
           SC   F   V IG   ++N    +   NF +S  SAPT
Sbjct: 90  SCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPT 127


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 498  SC*ILFQLQVDIGGDTIVNNQTTMTQINFNASYTSAPT 611
            SC   F   V IG   ++N    +   NF +S  SAPT
Sbjct: 1005 SCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPT 1042


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,296
Number of Sequences: 2352
Number of extensions: 15617
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)