Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29b08
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    29   3.2  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    29   3.2  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    29   3.2  
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 531 IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 629
           +GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 417 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 448


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform a protein.
          Length = 1128

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 531  IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 629
            +GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 1043 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 1074


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform b protein.
          Length = 1248

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 531  IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 629
            +GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 1043 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 1074


>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical protein
            ZK970.5 protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 387  PPTYNVNAKTRLVSGYENSRPININLRSITP 295
            PP   VN K R ++ + +S   N + RS++P
Sbjct: 1087 PPITKVNHKPRKIASFTDSELTNYSFRSVSP 1117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,457
Number of Sequences: 27780
Number of extensions: 316654
Number of successful extensions: 807
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)