Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29b05
         (174 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              19   5.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          19   5.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      19   5.5  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 71  PYITNNLLLKDSMNV 27
           PYITN ++    M+V
Sbjct: 144 PYITNFIIYSKRMDV 158


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 1   LLFEILYNCTFILSF 45
           +LFE+LYN     +F
Sbjct: 110 MLFELLYNAKDFQTF 124


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 1   LLFEILYNCTFILSF 45
           +LFE+LYN     +F
Sbjct: 110 MLFELLYNAKDFQTF 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,527
Number of Sequences: 438
Number of extensions: 288
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 37
effective length of database: 130,137
effective search space used:  2602740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)