Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29b02
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    36   0.029
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829...    30   1.4  
03_03_0237 + 15706391-15706699                                         27   7.6  
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701...    27   7.6  

>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 453 AVYRITFATCLFFLLMALIMIGVKSSKDPK 542
           AV R++    +FF ++A+IM G+K  KDP+
Sbjct: 79  AVLRVSLGNFVFFTILAIIMAGIKDQKDPR 108


>03_06_0331 -
           33181757-33181795,33182325-33182453,33182941-33182967,
           33183459-33183545,33183827-33183975,33185467-33185521,
           33185596-33187584,33188705-33188782
          Length = 850

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = -3

Query: 415 FPGNSPVTVLSVAFVQNGSF*SSLCNPGAKVIQHTIVTSTSISAYIRREEVELVQDGHAE 236
           FPG SP+   +  F QN    + L +P      +   ++ S  A I+RE++   +     
Sbjct: 472 FPGESPLQCSATDFGQNSEHNTCLVSPATSPASNVEHSNVSDKALIKREDMTNTEPSSQP 531

Query: 235 QHSEQAVLPQQHASCA 188
            +       Q+  S A
Sbjct: 532 MNLSPPTSEQKEGSTA 547


>03_03_0237 + 15706391-15706699
          Length = 102

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 258 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPG 413
           N +S+ +  A  LVL+ +   + L+ G+  E+ +    ++A D+T  G++ G
Sbjct: 4   NKSSNSISIAFFLVLIILASQVMLSHGIPLEMHRRYLLSHAADAT-KGVMEG 54


>01_06_0734 +
           31569017-31569358,31569832-31569906,31570009-31570159,
           31570716-31570784,31570864-31571036,31571474-31571611,
           31571747-31571872,31571951-31572049,31573175-31573298,
           31573465-31573528,31573798-31573852,31573951-31574075,
           31574228-31574301,31574436-31574485,31574722-31574808,
           31574897-31574947,31575025-31575108,31575400-31575498
          Length = 661

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 432 DEAVGYLAVYRITFATCLFFLLMALIMI 515
           +EA+GY+A   +  A+ L+ LLM L+++
Sbjct: 633 EEAIGYVAADELIEASFLYLLLMILLVL 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,454,493
Number of Sequences: 37544
Number of extensions: 250180
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)