Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29b02
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0) 50 2e-06
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0) 39 0.003
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0) 36 0.022
SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.039
SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17) 31 0.84
SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15) 29 2.6
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95) 28 5.9
>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1457
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +3
Query: 270 SRLMYALMLVLVTIVCCITLAPGLHNELQKLPF-CTNATDSTVTGLLPGNFKVDCDEAVG 446
SR Y L L + ++ ITL P + + K+P+ C T + CD VG
Sbjct: 773 SRFFYVLFLCVGNLLSFITLVPDMRYYIGKIPYLCDTVTSPRM-----------CDSLVG 821
Query: 447 YLAVYRITFATCLFFLLMALIMIGVKSSK 533
Y A YRI FA +F+ L++++ V S+K
Sbjct: 822 YSAAYRIYFAMTVFYFLLSILTYNVSSTK 850
>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 834
Score = 38.7 bits (86), Expect = 0.003
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +3
Query: 261 STSSRLMYALMLVLVTIVCCITLAPGLHNEL-QKLPFCTNATDSTVTGLLPGNFKVDCDE 437
STS+R +Y + TI P + L FC S ++ L GN
Sbjct: 342 STSTRFVYTFFFLCGTIASSFMYLPSVRQALGHNRFFC-----SKISRL--GNCM---SH 391
Query: 438 AVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPKS 545
GYLAVYRI F++L A+++ V++ DP++
Sbjct: 392 DPGYLAVYRICLTMATFYILFAVVLYNVRTYADPRA 427
>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1031
Score = 35.9 bits (79), Expect = 0.022
Identities = 12/31 (38%), Positives = 24/31 (77%)
Frame = +3
Query: 453 AVYRITFATCLFFLLMALIMIGVKSSKDPKS 545
++YR+ FA +F+ LMA ++IGV++ +D ++
Sbjct: 500 SLYRVCFAMAMFYFLMAFVLIGVRNEEDVRA 530
>SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 35.9 bits (79), Expect = 0.022
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 328 KVIQHTIVTSTSISAYIRREEVELVQDGHAEQHSEQAVLPQQHASCAAE----QRPNTAP 161
K IQ T + Y R +VE + G QH QA PQQ A AA Q P+TAP
Sbjct: 26 KTIQETTKPNKRKIEYTIRVDVEFLHVGQKLQHKLQAAEPQQQARFAAHEAAVQAPSTAP 85
Query: 160 I 158
+
Sbjct: 86 M 86
>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 35.1 bits (77), Expect = 0.039
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 264 TSSRLMYALMLVLVTIVCCITLAPGLHNE-LQKLPFCTNATDSTVTGLLPGNFKVDCDEA 440
TS +++Y L L+ T+V P L N + FC D ++ CD
Sbjct: 16 TSGKVIYLLFLMTGTLVSTFMFFPDLRNFFVVHSQFCDK--DLSLE---------KCDLL 64
Query: 441 VGYLAVYRITFATCLFFLLMALI 509
VG++ +YRI F +FFL MA++
Sbjct: 65 VGHILLYRIYFGMFVFFLFMAVV 87
>SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17)
Length = 259
Score = 30.7 bits (66), Expect = 0.84
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = -3
Query: 403 SPVTVLSVAFVQNGSF*SSLCNPGAKVIQHTIVTSTSISAYIRREEVELVQDGHAEQHSE 224
+P + + +G S LC ++ +H S++ + E+ LV+DG+ +Q +E
Sbjct: 112 TPFQAIDFLVLAHGFKMSELCKQCIEIAKHI-----SLNELRKHEKYSLVEDGNGKQLAE 166
Query: 223 QAVLPQQHASCAAEQRPNT 167
+ V + EQ+PN+
Sbjct: 167 RRVELLEGKVATLEQKPNS 185
>SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)
Length = 1366
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 210 HSNTLAVLQNKGPI-LHPFLVFISHFVCVDCDVCFM 106
HS ++ K PI F V+I+HF C D +CF+
Sbjct: 422 HSESIG--NKKSPIETDAFEVYINHFTCTDTALCFI 455
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 267 RWNWCKMD--MLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISH 139
+W +C + +L N + C AV+ +K P L+P + +I++
Sbjct: 3681 KWEFCSLAFMVLENCYSVACYSDELCAVVPSKSPQLNPRIAYINN 3725
>SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95)
Length = 164
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 267 SSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNF 419
S+R+++ L+ +V IVC + GL+ + P N T++ + G+ G F
Sbjct: 38 SARVVFILLGWIVAIVCGLASLYGLYKNFRTHPEPFNMTENVIYGVF-GRF 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,046,122
Number of Sequences: 59808
Number of extensions: 307386
Number of successful extensions: 819
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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