Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29b02
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   2.7  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   2.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   4.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   6.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.3  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 279 MYALMLVLVTIVCCI 323
           +Y L+ VLVTI C I
Sbjct: 3   IYILLFVLVTITCVI 17


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 279 MYALMLVLVTIVCCI 323
           +Y L+ VLVTI C I
Sbjct: 3   IYILLFVLVTITCVI 17


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 88  QITSICILILLYALINIQIFY 26
           QIT++C+ I L A + +   Y
Sbjct: 736 QITTLCVAISLSATVTLVCLY 756


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 465 ITFATCLFFLLMALIMIGV 521
           ITFA+ L F+L+  I + V
Sbjct: 82  ITFASFLLFILLVQIAVAV 100


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 60  NIKIQILVIWNVNCST*NKHHN 125
           N+    ++IW ++CS   K HN
Sbjct: 14  NLNQNQMMIWALDCSIKPKDHN 35


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 88  QITSICILILLYALINIQIFY 26
           QIT++C+ I L A + +   Y
Sbjct: 826 QITTLCVAISLSATVTLVCLY 846


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 143 LTLFVLIVMFVLCTTIYIPNN 81
           +  FVL  M ++   + +PNN
Sbjct: 7   IRFFVLTTMLMMAIAVELPNN 27


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 502 AISRKKRHVANVIL*TAKYPTASSQSTLKFPGN 404
           A +RKK   ++     A  PT  S  T KFP N
Sbjct: 338 AFARKKTDYSSFGKILATEPTLFSNVTPKFPRN 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,071
Number of Sequences: 438
Number of extensions: 2977
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)