Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a23
         (486 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    25   0.28 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    25   0.28 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    25   0.28 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   3.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   5.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   7.9  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 377 WRHARSIQAQPRLTAGFEQHWPLQANLSTDNAN 475
           W   R ++ + R+  G     P+ A+LST N+N
Sbjct: 300 WFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 332


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 377 WRHARSIQAQPRLTAGFEQHWPLQANLSTDNAN 475
           W   R ++ + R+  G     P+ A+LST N+N
Sbjct: 89  WFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 377 WRHARSIQAQPRLTAGFEQHWPLQANLSTDNAN 475
           W   R ++ + R+  G     P+ A+LST N+N
Sbjct: 89  WFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 124  RIKNSGYHNPRILADKSTSLTVVPQQASIA 213
            +I ++  +NP I A +  SL  V Q+ SIA
Sbjct: 1400 QIGSTSSNNPSISAFRKKSLAYVQQRMSIA 1429



 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 187 VVPQQASIAASTGPSQPTHRASWSYG 264
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 124  RIKNSGYHNPRILADKSTSLTVVPQQASIA 213
            +I ++  +NP I A +  SL  V Q+ SIA
Sbjct: 1400 QIGSTSSNNPSISAFRKKSLAYVQQRMSIA 1429



 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 187 VVPQQASIAASTGPSQPTHRASWSYG 264
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 251 PGPTARKFTASSRRNSSSQPTTGSST 328
           P P   + T S    +S QPT  S+T
Sbjct: 399 PEPQPTQTTESEPTQASEQPTESSTT 424


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 187 VVPQQASIAASTGPSQPTHRASWSYG 264
           V+P   + A+S G   P H +S+  G
Sbjct: 106 VLPGNYANASSVGSRNPIHTSSYMTG 131


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 251 PGPTARKFTASSRRNSSSQPTTGSSTL 331
           P P++   +  ++R S+S PT  S ++
Sbjct: 75  PSPSSTPSSLPTQRTSTSNPTYSSRSV 101


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 54  KGKIFHRAGD 25
           KG+IFH  GD
Sbjct: 370 KGEIFHMGGD 379


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,908
Number of Sequences: 336
Number of extensions: 2420
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)