Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29a23
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 33 0.16
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 32 0.21
03_01_0168 + 1382531-1383931,1384028-1384150 31 0.49
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 30 0.86
11_03_0047 - 9311913-9312659 30 1.1
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954... 30 1.1
08_02_0847 - 21828372-21828545,21829043-21829206,21829831-218299... 29 2.0
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787... 29 2.6
01_05_0809 - 25422832-25422919,25423887-25424443 29 2.6
10_08_0439 - 17926021-17927133 28 4.6
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 4.6
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 28 4.6
12_02_1163 - 26617450-26617550,26617643-26617744,26618606-26618732 27 6.0
09_02_0468 - 9608922-9610061 27 6.0
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 27 6.0
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067... 27 6.0
05_05_0180 - 23027979-23028092,23028180-23028255,23028342-230284... 27 6.0
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 27 6.0
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656... 27 6.0
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482... 27 6.0
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 27 6.0
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 27 8.0
05_07_0240 + 28606345-28607316 27 8.0
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073... 27 8.0
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416... 27 8.0
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 27 8.0
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 32.7 bits (71), Expect = 0.16
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 137 PATTIPASSQIKARH*Q--SSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQP 310
P +P S+I AR + S+ A D SRL LP +K +SS+ ++ S P
Sbjct: 624 PVELLPRCSEIVARQLELVESYQLLAETFGTDSNSRLQILPVKITKK--SSSKGSAGSMP 681
Query: 311 TTGSSTLGVTHLRRGSS 361
GSS L V+ GSS
Sbjct: 682 KQGSSDLIVSDNGGGSS 698
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 203 PASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPTTGSST 328
PA QP Q + ++ + PT+ ++S R + SS+P +ST
Sbjct: 143 PAPQPVQPQQQLVSPVAAPTSSSSSSSDRSSGSSKPARATST 184
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 31.1 bits (67), Expect = 0.49
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 278 ASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHAR 391
A +RRN SS P+ ++ G+ H+ G +A + W+ R
Sbjct: 65 AGNRRNDSSPPSDDAAPTGLGHIVFGIAASSELWKSRR 102
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 30.3 bits (65), Expect = 0.86
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +2
Query: 152 PASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPTTGSSTL 331
PA+S + +S ++P Q + H SR + P P+ +K + + S +P T S
Sbjct: 657 PATSSLNNLLKRSEPAEPR-QARSSHSSRPASRPKPSGKKKISEHDTDKSRRPHTKKSAT 715
Query: 332 GVTHLRRGSS 361
+RR SS
Sbjct: 716 SPRKMRRLSS 725
>11_03_0047 - 9311913-9312659
Length = 248
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 230 RSRLTALPGPTARKFTASSRRNSSSQPTTGSSTLGVTH 343
R ++ P P T+SS +S S PTTGS G+ H
Sbjct: 44 RELASSSPEPCRGLITSSSSSSSPSSPTTGSFCDGIDH 81
>05_03_0460 -
14294931-14295110,14295200-14295234,14295358-14295457,
14295548-14295669,14296272-14296367,14296489-14298949
Length = 997
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 80 PATR--CEHATF*FIFSASRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTA-L 250
P++R C +F F SAS P +PAS A H S+P + RL A L
Sbjct: 10 PSSRSLCAPRSFSFSTSASPPPRAPVPASPSYLAHHLLDEFSRPRATRDAARLRRLAAEL 69
Query: 251 PGPTA 265
P A
Sbjct: 70 TAPAA 74
>08_02_0847 -
21828372-21828545,21829043-21829206,21829831-21829967,
21830909-21831241,21832067-21833244
Length = 661
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 297 VHRSPRPDHQRLGSHISGVAALHTWTTGDTHAAFKLSLDSPQASSSTGPCKLISA 461
+H + R H L SH++ A H + AF L++ P +++T PC L ++
Sbjct: 43 LHAALRSLHLSLSSHLAPFLASHLFHRD----AFALTIPPPDHTAATSPCALCAS 93
>01_06_0451 -
29476892-29477516,29477600-29477843,29478313-29478714,
29481164-29481358,29481418-29481537,29481615-29481683,
29481901-29481999,29483857-29483946,29484049-29484180,
29485062-29485173
Length = 695
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 105 PSDSSSAHQELRLPQSPHPRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVLRHANSLPH 284
PS+S S H++ +P + P++ H + P S HR + SP +A++ H
Sbjct: 173 PSNSPSIHRKHGIPVAAPPKQ--HSSNLPP--SHHRPHKGSFPVISPTPHKADNASATKH 228
Query: 285 HAATVHRSPRP 317
+ +H SP P
Sbjct: 229 GRSGLHHSPAP 239
>01_05_0809 - 25422832-25422919,25423887-25424443
Length = 214
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Frame = +2
Query: 152 PASSQIKARH*QSSHSKPASQPQQD---HRSRLTALPGPTARKFTASSRRNSSSQPTTGS 322
P+S Q R H P+ HRSRL LP PTA T R + T S
Sbjct: 77 PSSQQRDGRRHHRHHGGVGGSPRYRLWLHRSRLEPLPTPTAAADTEEQRLRLENAVQTNS 136
>10_08_0439 - 17926021-17927133
Length = 370
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 107 F*FIFSASRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGP 259
F F F AT+ A++ A QSS S A+ P D + L ++ GP
Sbjct: 60 FPFAFPPMMPTATSASAAAAAAASPTQSSSSSAATSPSSDLSAFLNSMLGP 110
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 160 LADKSTSLTVVPQQASIA-ASTGPSQPTHRASW 255
LAD T P+ SI AST PSQ H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 197 SKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPTTGSSTL 331
S SQPQQ H ++P PT +A ++S P S +
Sbjct: 393 SSGGSQPQQTHPITKPSVPAPTVSGVSAGVSNSASQWPKVTQSDI 437
>12_02_1163 - 26617450-26617550,26617643-26617744,26618606-26618732
Length = 109
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 152 PASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPTTGSS 325
PA S H +S+H + P Q++ + P P T S N S PT +S
Sbjct: 3 PAPSNYTTTHGKSAHPQQNETPDQENDASAVVQPSPRTNIGTEYSDENMS--PTIATS 58
>09_02_0468 - 9608922-9610061
Length = 379
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 231 AADSPRFLVLRHANSLPHHAATVHRSPRPDHQR 329
+ DSPR+ R S+P T+ RSPR +R
Sbjct: 77 SVDSPRWRGARRRPSVPDMELTLSRSPRAGEER 109
>07_01_1149 + 10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 268 ACRRTRKRGESAAMVLLRLRCWLAVGRLSM 179
+C + RKRG S+ ++L++R A GR+S+
Sbjct: 975 SCNKWRKRGISSVPLILKVRVRPAPGRVSV 1004
>06_03_0824 +
25105450-25105482,25105649-25106485,25106580-25106738,
25106830-25106886,25106971-25107202,25107338-25107638,
25107703-25107976,25108051-25108152,25108244-25108525
Length = 758
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 228 IAADSPRFLVLRHANSLPHHAATVHRSPRPDHQRLGSHISGVAALHTWTTGDTHA 392
IA R ++L++ N P + R+ + LG H + A+H T D +
Sbjct: 320 IAEFIERDVILKNRNPFPAYGKMKLRNKHDEKYNLGHHTGAIEAIHVDRTYDARS 374
>05_05_0180 -
23027979-23028092,23028180-23028255,23028342-23028433,
23028689-23028790,23028865-23029138,23029203-23029503,
23029639-23029870,23029955-23030011,23030103-23030261,
23030356-23031192,23031383-23031437,23032103-23032158
Length = 784
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 228 IAADSPRFLVLRHANSLPHHAATVHRSPRPDHQRLGSHISGVAALHTWTTGDTHA 392
IA R ++L++ N P + R+ + LG H + A+H T D +
Sbjct: 346 IAEFIERDVILKNRNPFPAYGKMKLRNKHDEKYNLGHHTGAIEAIHVDRTYDARS 400
>03_02_0665 - 10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 23 ISPARWKIFPLSYIFPNW*PATRCEHATF*FIFSASRTPATTI 151
IS + FPL P++ P T C + F ++SA+R +++
Sbjct: 1196 ISAIGLRCFPLFESHPSFGPTTTCSVSVFSVVYSAARWKQSSV 1238
>03_02_0225 +
6565337-6565369,6565564-6565734,6566113-6566400,
6566495-6566653,6566745-6566801,6566886-6567117,
6567253-6567553,6567618-6567891,6567966-6568067,
6568159-6568440
Length = 632
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 228 IAADSPRFLVLRHANSLPHHAATVHRSPRPDHQRLGSHISGVAALHTWTTGDTHA 392
IA R ++L++ N P + R+ + LG H + A+H T D +
Sbjct: 194 IAEFIERDVILKNRNPFPAYGKMKLRNKHDEKYNLGHHTGAIEAIHVDRTYDARS 248
>01_05_0461 +
22446797-22447050,22447171-22447288,22447895-22448217,
22448908-22449056,22449324-22449463,22449606-22449757,
22449862-22450021,22450071-22450088
Length = 437
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 211 AASTGPSQPTHRASWSYGTQIHCLITPQQFIAAHDRIINAWGHTSPAWQ 357
A+STG +P +W+ G++ L F AA+ ++ + + WQ
Sbjct: 26 ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 27.5 bits (58), Expect = 6.0
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 125 ASRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSS 304
++ P TIPA+S + +PA DH PG + +ASS +SSS
Sbjct: 9 SASAPFPTIPAASSPRNPRAARPRRQPAPFRSSDH-------PGAASASASASSSSSSSS 61
Query: 305 QPTTGSSTLGVTH-LRRGSSA 364
G + V H +RRG+ A
Sbjct: 62 TRRLGVD-IPVRHGVRRGAGA 81
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 239 LTALPGPTARKFTASSRRNSSSQPT 313
+ A+PGPT+R NSSS P+
Sbjct: 510 IPAIPGPTSRNVPMEENSNSSSIPS 534
>05_07_0240 + 28606345-28607316
Length = 323
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 122 SASRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLT-ALPG 256
+A+ AT PA++ +R +S +S P Q + RLT +PG
Sbjct: 20 AAAAAAATPTPAAAAASSRSSRSKKPPHSSDPNQSKKPRLTLTVPG 65
>03_06_0557 +
34704990-34705400,34706271-34706485,34707142-34707367,
34707447-34707532,34708030-34708121,34708232-34708471,
34709455-34709750
Length = 521
Score = 27.1 bits (57), Expect = 8.0
Identities = 30/107 (28%), Positives = 44/107 (41%)
Frame = +2
Query: 71 NW*PATRCEHATF*FIFSASRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTAL 250
NW + EH F F S S +++ P SS + A ++HSK ++ +D L
Sbjct: 404 NWLSCVQVEHPDFRFFVSRSAAKSSS-PRSSSLPA----NAHSKRETERMRD----LEEF 454
Query: 251 PGPTARKFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHAR 391
G +A R +SS T S RR +A+ Y AR
Sbjct: 455 RGGSAPPRDGDERTVASSSSTPWWSGDPEAKRRRRVAAYKAYAVEAR 501
>03_02_0693 -
10441253-10441294,10441404-10441511,10441594-10441677,
10441765-10443062,10443111-10444804,10444890-10444957,
10445057-10445186,10445292-10445415,10445551-10445711,
10446714-10446868
Length = 1287
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +2
Query: 188 SSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSS 301
SS PA + DH +P P A+ R+SS
Sbjct: 398 SSDVVPAEEENNDHHQGYVCVPSPQAKPVAGEHERSSS 435
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 105 PSDSSSAHQELRLPQSPHPRR*KHVIDSRPTASQHRSLNRTIA 233
PSD + H+ P+ PH RR V +R R+L+R A
Sbjct: 1215 PSDPEAGHEGAPCPRRPHARR---VAGAREIGRTARTLHRLAA 1254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,481,191
Number of Sequences: 37544
Number of extensions: 327766
Number of successful extensions: 1323
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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