Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a23
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.11 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   0.43 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    25   0.57 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.7  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.0  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   5.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.3  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   5.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 251 PGPTARKFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARS 394
           P P  R  +A S   SSS P  G++  G    R G   +    +  +S
Sbjct: 511 PSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKS 558



 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 148 NPRILADKSTSLTVVPQQASIAASTGPSQ 234
           NPRI +  S+S +  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 282 HHAATVHRSPRPDHQRLGSHISGVA 356
           HH   VHR  +P++  L S   G A
Sbjct: 26  HHNGVVHRDLKPENLLLASKAKGAA 50


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = +3

Query: 81  LRRDVNTQPSDSSSAHQELRLPQSPHPRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVL 260
           LRR+   +    ++    +  P+ PHPR  +   ++ P A    +    I    P    L
Sbjct: 87  LRREAELEAEPGNNRPVYISQPRPPHPRLRR---EAEPEAEPGNNRPVYIPQPRPPHPRL 143

Query: 261 RHANSL---PHHAATVHRS-PRPDHQRL 332
           R    L   P +   V+ S PRP H RL
Sbjct: 144 RREAELEAEPGNNRPVYISQPRPPHPRL 171



 Score = 24.2 bits (50), Expect = 0.75
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = +3

Query: 81  LRRDVNTQPSDSSSAHQELRLPQSPHPRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVL 260
           LRR+   +    ++    +  P+ PHPR  +   ++ P A    +    I    P    L
Sbjct: 31  LRREAKPEAEPGNNRPVYIPQPRPPHPRLRR---EAEPEAEPGNNRPVYIPQPRPPHPRL 87

Query: 261 RHANSL---PHHAATVHRS-PRPDHQRL 332
           R    L   P +   V+ S PRP H RL
Sbjct: 88  RREAELEAEPGNNRPVYISQPRPPHPRL 115



 Score = 21.4 bits (43), Expect = 5.3
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
 Frame = +3

Query: 81  LRRDVNTQPSDSSSAHQELRLPQSPHPRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVL 260
           LRR+   +    ++    +  P+ PHPR  +         +             PR    
Sbjct: 171 LRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 230

Query: 261 RHANSLPHHAATVH-RSPRPDHQRL 332
               + P +   V+   PRP H RL
Sbjct: 231 AEPEAEPGNNRPVYIPQPRPPHPRL 255



 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 81  LRRDVNTQPSDSSSAHQELRLPQSPHPR 164
           LRR+   +    ++    +  P+ PHPR
Sbjct: 255 LRREAKPEAKPGNNRPVYIPQPRPPHPR 282


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 57  RISSQTGDLRRDVNTQPSDSSSAHQELRLPQSPHPR 164
           R+ S+   L + VN     S   HQ+L   QS HP+
Sbjct: 790 RLMSEDKRLSKSVNGD--QSQPPHQQLHHHQSTHPQ 823



 Score = 22.2 bits (45), Expect = 3.0
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +2

Query: 185  QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPTTGSSTLGVTHLRRG-SS 361
            Q    +   QPQQ  +      P P  ++     ++    Q   G+ +  V  L+RG +S
Sbjct: 1507 QQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQRGYNS 1566

Query: 362  AHMDYWRHARSIQAQ 406
             +      A S Q Q
Sbjct: 1567 GNNRSGEQANSQQQQ 1581


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = +3

Query: 81  LRRDVNTQPSDSSSAHQELRLPQSPHPRR*KHVIDSRPTASQHRSLNRTIAADSPR---F 251
           LRR+  ++    ++    +  P+ PHPR     +   P A      NR +    PR    
Sbjct: 88  LRREAESEAEPGNNRPVYIPQPRPPHPR-----LRREPEAEPGN--NRPVYIPQPRPPHP 140

Query: 252 LVLRHANSLPHHAATVH-RSPRPDHQRL 332
            + R   + P +   V+   PRP H R+
Sbjct: 141 RLRREPEAEPGNNRPVYIPQPRPPHPRI 168



 Score = 22.2 bits (45), Expect = 3.0
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
 Frame = +3

Query: 81  LRRDVNTQPSDSSSAHQELRLPQSPHPRR*KHVIDSRPTASQHRSLNRTIAADSPR---F 251
           LRR+   +    ++    +  P+ PHPR  +   ++ P A      NR I    PR    
Sbjct: 32  LRREAKPEAEPGNNRPIYIPQPRPPHPRLRR---EAEPKAEPGN--NRPIYIPQPRPPHP 86

Query: 252 LVLRHANS--LPHHAATVH-RSPRPDHQRL 332
            + R A S   P +   V+   PRP H RL
Sbjct: 87  RLRREAESEAEPGNNRPVYIPQPRPPHPRL 116


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 282 HHAATVHRSPRPDHQR 329
           HH    HR  R D++R
Sbjct: 156 HHGMAYHRGHRKDYER 171


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
 Frame = +3

Query: 81  LRRDVNTQPSDSSSAHQELRLPQSPHPRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVL 260
           LRR+   +    ++    +  P+ PHPR  +         +             PR    
Sbjct: 32  LRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 91

Query: 261 RHANSLPHHAATVH-RSPRPDHQRL 332
               + P +   V+   PRP H RL
Sbjct: 92  AEPEAEPGNNRPVYIPQPRPPHPRL 116



 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 81  LRRDVNTQPSDSSSAHQELRLPQSPHPR 164
           LRR+   +    ++    +  P+ PHPR
Sbjct: 116 LRREAEPEAEPGNNRPVYIPQPRPPHPR 143


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +3

Query: 282 HHAATVHRSPRPDHQRLGSHISGVAALHTWT 374
           ++ A +   P P +    SHI    ++ T+T
Sbjct: 429 YNPALIQSQPSPQYPSTSSHILQQPSIRTYT 459


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
 Frame = +3

Query: 81  LRRDVNTQPSDSSSAHQELRLPQSPHPRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVL 260
           LRR+   +    ++    +  P+ PHPR  +         +             PR    
Sbjct: 3   LRREAKPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 62

Query: 261 RHANSLPHHAATVH-RSPRPDHQRL 332
               + P +   V+   PRP H RL
Sbjct: 63  AEPEAEPGNNRPVYIPQPRPPHPRL 87



 Score = 21.4 bits (43), Expect = 5.3
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
 Frame = +3

Query: 81  LRRDVNTQPSDSSSAHQELRLPQSPHPRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVL 260
           LRR+   +    ++    +  P+ PHPR  +   ++ P A    +    I    P    L
Sbjct: 87  LRREAEPEAEPGNNRPVYIPQPRPPHPRLRR---EAEPEAEPGNNRPVYIPQPRPPHPRL 143

Query: 261 RH---ANSLPHHAATVH-RSPRPDHQRL 332
           R      + P +   V+   PRP H RL
Sbjct: 144 RREAKPEAEPGNNRPVYIPQPRPPHPRL 171



 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 81  LRRDVNTQPSDSSSAHQELRLPQSPHPR 164
           LRR+   +    ++    +  P+ PHPR
Sbjct: 171 LRREAEPEAEPGNNRPVYIPQPRPPHPR 198


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 201 SQHRSLNRTIAADSP 245
           S H SLN T+  D P
Sbjct: 255 SLHASLNHTLTKDQP 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,871
Number of Sequences: 438
Number of extensions: 2988
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)