Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a20
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    73   4e-14
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...    60   4e-10
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    28   1.5  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    26   4.6  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   6.0  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    25   8.0  

>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
 Frame = +2

Query: 371 HKLEYSYWMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELPPLSD 550
           H L++ + +WF + P + L      +   L+ +    +VE++WG++  +++ S LP  SD
Sbjct: 64  HPLQHEWTLWFLKPPTQGLE-----WSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSD 118

Query: 551 LHLFKLGIKPMWEDPANVNGGKWVVRLRK--TQTGRAWEDLCMAMLGE 688
              F  GI+P WEDP N+NGGKW  + +   +     W  + +A +GE
Sbjct: 119 YSYFLKGIRPEWEDPQNMNGGKWAYQSKHKGSNLDELWLYMVLAAIGE 166


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
 Frame = +2

Query: 368 EHKLEYSYWMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELPPLS 547
           +H L   + +WF   P   L      + +  + +    SVE++WG++ ++   S LP  S
Sbjct: 37  KHPLARPWTLWFLMPPTPGLE-----WNELQKNIITFNSVEEFWGIHNNINPASSLPIKS 91

Query: 548 DLHLFKLGIKPMWEDPANVNGGKWVVRLRKTQTGRA----WEDLCMAMLGE 688
           D   F+ G++P WED  N  GGKW  +  K + G A    W    +A +GE
Sbjct: 92  DYSFFREGVRPEWEDVHNKTGGKWAFQ-NKGRGGNALDEMWLTTVLAAIGE 141


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 406 KAARPRSYHNTHW 444
           K A+PR  HNTHW
Sbjct: 493 KLAKPRQLHNTHW 505


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 470 PPNVTPGRNQWVLW*DLGRAAL---KTTSSSYIPACVRAAARKEPTDRRDSYHHLR 312
           PP +   RNQ+V W   G +A+   + +  + +PA  R   ++ P D    + H +
Sbjct: 229 PPGMPYNRNQYVAW--HGASAVYHPQPSLEAQLPAAARKRKKEPPKDATWLFQHAK 282


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 476 VGSVEQWWGLYTHLARPSE-LPPLSDLH 556
           V ++++W+ + +  + PSE L PL D H
Sbjct: 564 VAALDEWYSILSTCSNPSELLDPLKDKH 591


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 618 GWSDYVKHRRVVHGKTYVWQCW 683
           GW DY KH+R+ +    V   W
Sbjct: 162 GWKDYDKHQRLRNASVTVGDDW 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,949
Number of Sequences: 5004
Number of extensions: 62142
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)