Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a20
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857...   108   5e-24
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449...    91   6e-19
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065...    87   2e-17
02_01_0149 + 1062044-1062997                                           34   0.096
06_01_0420 + 2998269-2999195                                           33   0.17 
06_03_0719 - 23845879-23845881,23846197-23846253,23846786-238470...    29   4.8  
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886...    28   6.3  

>03_02_0446 -
           8567436-8567567,8567649-8567768,8569837-8569914,
           8570018-8570122,8570214-8570306,8570464-8570619
          Length = 227

 Score =  108 bits (259), Expect = 5e-24
 Identities = 46/107 (42%), Positives = 69/107 (64%)
 Frame = +2

Query: 371 HKLEYSYWMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELPPLSD 550
           H L   + +W++RR     + +   Y   ++ +    +VE +W  Y HL RP  LP  +D
Sbjct: 49  HPLRRRFVLWYTRRTPGARSQS---YEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTD 105

Query: 551 LHLFKLGIKPMWEDPANVNGGKWVVRLRKTQTGRAWEDLCMAMLGEQ 691
           LHLFK GI+P+WEDPAN +GGKW++R +KT +GR WEDL + ++G+Q
Sbjct: 106 LHLFKEGIRPLWEDPANRSGGKWIIRFKKTVSGRFWEDLVLVLVGDQ 152


>10_08_0323 +
           16743358-16743566,16744536-16744704,16744834-16744959,
           16745813-16745878,16745997-16746047
          Length = 206

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
 Frame = +2

Query: 362 PHEHKLEYSYWMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELPP 541
           PH+   ++++W     +P          +G +LR      +VE++WGLY  + RPS++  
Sbjct: 29  PHKLHRQWAFWYDIQSKPKPG-----AAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTV 83

Query: 542 LSDLHLFKLGIKPMWEDPANVNGGKWVVRL-RKTQTGRAWEDLCMAMLGEQF 694
            +D HLFK G++P WEDP   NGGKW V   RKT     W +  MA++GEQF
Sbjct: 84  NADFHLFKAGVEPKWEDPECANGGKWTVPCSRKTTLENMWLETLMALIGEQF 135


>01_07_0331 +
           42804385-42804659,42806175-42806340,42806424-42806549,
           42807142-42807207,42807645-42807698,42808843-42809019,
           42809100-42809102
          Length = 288

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 40/115 (34%), Positives = 60/115 (52%)
 Frame = +2

Query: 359 PPHEHKLEYSYWMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELP 538
           P   H LE+++  WF     +    T   +G ++R +    +VE +W LY ++  PS+L 
Sbjct: 48  PAAPHPLEHAWTFWFDNPQGKSKQAT---WGSSIRPIHTFSTVEDFWSLYNNIHHPSKLV 104

Query: 539 PLSDLHLFKLGIKPMWEDPANVNGGKWVVRLRKTQTGRAWEDLCMAMLGEQFMVG 703
             +D H FK  I+P WEDP   NGGKW     + ++   W    +AM+GEQF  G
Sbjct: 105 VGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKSDTMWLHTLLAMIGEQFDYG 159


>02_01_0149 + 1062044-1062997
          Length = 317

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = +2

Query: 581 MWEDPANVNGGKWV-VRLRKT-QTGRAWEDLCMAMLGEQFMV 700
           +++D A+V GG+   VR R   + GR WED+C+A+LG Q +V
Sbjct: 185 LYQD-AHVAGGELDGVRRRGVFEPGRCWEDMCLAVLGAQHLV 225


>06_01_0420 + 2998269-2999195
          Length = 308

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -1

Query: 479 PPDPPNVTPGRNQWVLW*DLGRAALKTTSSSYIPACVRAAARKEPTDRRDSYHHLRCC 306
           PP PP   P R +W +W  +G  A    ++S++   V  A R     RR+       C
Sbjct: 221 PPPPPRPPPVRERWWVW-KVGATAGGVAAASFLAVTVVGAVRWRRRRRREEMERRAMC 277


>06_03_0719 -
           23845879-23845881,23846197-23846253,23846786-23847011,
           23847118-23847245,23847339-23847444,23847543-23847622,
           23847773-23847870,23848015-23848128,23848239-23848379,
           23849012-23849096,23849789-23850016
          Length = 421

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 380 EYSYWMWFSRRPARDLTTTPTGYGQALRLVGR 475
           E++  + F+RR   D+  TP  Y QA+ ++GR
Sbjct: 102 EWTGKLSFNRRCLHDIGNTPNPYEQAISIIGR 133


>04_03_0283 +
           13887388-13887573,13887711-13887806,13888517-13888637,
           13888734-13888840,13888949-13889166,13890219-13890396,
           13890492-13890611,13891601-13891687,13892401-13892511,
           13892618-13893439
          Length = 681

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 552 RSESGGNSEGLARCVYRPHHCSTL 481
           R  SGGNSEG+A  +  PH   T+
Sbjct: 378 RKASGGNSEGIAPFLQLPHFTETV 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,606,622
Number of Sequences: 37544
Number of extensions: 495270
Number of successful extensions: 1355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)