Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29a20
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 122 3e-28
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 122 3e-28
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 77 9e-15
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 77 1e-14
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 75 5e-14
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 74 9e-14
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 68 6e-12
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 62 4e-10
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 62 4e-10
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 62 4e-10
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 29 3.2
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 29 3.2
Z81050-9|CAB02858.2| 400|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z93384-1|CAB07633.3| 342|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical pr... 27 9.9
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 27 9.9
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 27 9.9
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 122 bits (294), Expect = 3e-28
Identities = 52/112 (46%), Positives = 75/112 (66%)
Frame = +2
Query: 368 EHKLEYSYWMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELPPLS 547
+H+L+YSY + RP P Y ++ VG + SVEQ+W + H RP+E+ +
Sbjct: 30 DHQLQYSYTFSYFMRPTGKFD--PEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKA 87
Query: 548 DLHLFKLGIKPMWEDPANVNGGKWVVRLRKTQTGRAWEDLCMAMLGEQFMVG 703
D+H FK G+KP+WEDPAN GGKW++RL+K + R WE+L MA++GEQF+VG
Sbjct: 88 DIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLSTRIWENLLMAIIGEQFLVG 139
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 122 bits (294), Expect = 3e-28
Identities = 52/112 (46%), Positives = 75/112 (66%)
Frame = +2
Query: 368 EHKLEYSYWMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELPPLS 547
+H+L+YSY + RP P Y ++ VG + SVEQ+W + H RP+E+ +
Sbjct: 30 DHQLQYSYTFSYFMRPTGKFD--PEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKA 87
Query: 548 DLHLFKLGIKPMWEDPANVNGGKWVVRLRKTQTGRAWEDLCMAMLGEQFMVG 703
D+H FK G+KP+WEDPAN GGKW++RL+K + R WE+L MA++GEQF+VG
Sbjct: 88 DIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLSTRIWENLLMAIIGEQFLVG 139
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 77.4 bits (182), Expect = 9e-15
Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Frame = +2
Query: 356 VPPH---EHKLEYSYWMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARP 526
VPP H L+ + +W+ + + L++V +VE +W LY H+
Sbjct: 24 VPPELLTRHPLQNRWALWYLKADRNK------EWEDCLKMVSLFDTVEDFWSLYNHIQSA 77
Query: 527 SELPPLSDLHLFKLGIKPMWEDPANVNGGKWVV---RLRKTQ-TGRAWEDLCMAMLGEQF 694
L SD +LFK GIKPMWED NV GG+W+V + R+TQ W +L MA++GEQF
Sbjct: 78 GGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQF 137
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Frame = +2
Query: 392 WMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELPPLSDLHLFKLG 571
W W+ R+ + + + L+ V SV ++W L+ + PS L P SD ++F+ G
Sbjct: 23 WTWWYLNDERNKS-----WEERLKNVKTFSSVGEFWALHDSIKPPSGLNPPSDYNVFRDG 77
Query: 572 IKPMWEDPANVNGGKWVVRLRKTQT----GRAWEDLCMAMLGEQF 694
I+PMWE P N NGG+W++ + K +T W ++ MAM+GEQF
Sbjct: 78 IEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQF 122
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 74.9 bits (176), Expect = 5e-14
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Frame = +2
Query: 356 VPPH---EHKLEYSYWMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARP 526
VPP H L+ + +W+ + + L++V +VE +W LY H+
Sbjct: 24 VPPELLTRHPLQNRWALWYLKADRNK------EWEDCLKMVSLFDTVEDFWSLYNHIQSA 77
Query: 527 SELPPLSDLHLFKLGIKPMWEDPANVNGGKWVVRL-----RKTQ-TGRAWEDLCMAMLGE 688
L SD +LFK GIKPMWED NV GG+W+V + R+TQ W +L MA++GE
Sbjct: 78 GGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQLQRRTQLLDHYWLELLMAIVGE 137
Query: 689 QF 694
QF
Sbjct: 138 QF 139
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 74.1 bits (174), Expect = 9e-14
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Frame = +2
Query: 356 VPPH---EHKLEYSYWMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARP 526
VPP H L+ + +W+ + + L++V +VE +W LY H+
Sbjct: 24 VPPELLTRHPLQNRWALWYLKADRNK------EWEDCLKMVSLFDTVEDFWSLYNHIQSA 77
Query: 527 SELPPLSDLHLFKLGIKPMWEDPANVNGGKWVVRL------RKTQ-TGRAWEDLCMAMLG 685
L SD +LFK GIKPMWED NV GG+W+V + R+TQ W +L MA++G
Sbjct: 78 GGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQKLQRRTQLLDHYWLELLMAIVG 137
Query: 686 EQF 694
EQF
Sbjct: 138 EQF 140
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 68.1 bits (159), Expect = 6e-12
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Frame = +2
Query: 392 WMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELPPLSDLHLFKLG 571
W W+ R+ + + L+ V +V ++W LY + PS L L D ++F+
Sbjct: 18 WTWWYLNDERNKS-----WEDRLKKVYTFNTVSEFWALYDAIRPPSGLNALCDYNVFRDD 72
Query: 572 IKPMWEDPANVNGGKWVVRLRKTQT----GRAWEDLCMAMLGEQF 694
I+PMWE P N NGG+W++ + K +T W ++ MA++GEQF
Sbjct: 73 IQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQF 117
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Frame = +2
Query: 392 WMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELPPLSDLHLFKLG 571
W W+ R+ + + L+ V +V ++W Y + PS L L D ++F+
Sbjct: 15 WSWWFLNDDRNAS-----WQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDD 69
Query: 572 IKPMWEDPANVNGGKWVVRLRKTQT----GRAWEDLCMAMLGEQF 694
I+P WE P N +GG+W++ + K +T W ++ +A++GEQF
Sbjct: 70 IQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQF 114
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Frame = +2
Query: 392 WMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELPPLSDLHLFKLG 571
W W+ R+ + + L+ V +V ++W Y + PS L L D ++F+
Sbjct: 54 WSWWFLNDDRNAS-----WQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDD 108
Query: 572 IKPMWEDPANVNGGKWVVRLRKTQT----GRAWEDLCMAMLGEQF 694
I+P WE P N +GG+W++ + K +T W ++ +A++GEQF
Sbjct: 109 IQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQF 153
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Frame = +2
Query: 392 WMWFSRRPARDLTTTPTGYGQALRLVGRVGSVEQWWGLYTHLARPSELPPLSDLHLFKLG 571
W W+ R+ + + L+ V +V ++W Y + PS L L D ++F+
Sbjct: 15 WSWWFLNDDRNAS-----WQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDD 69
Query: 572 IKPMWEDPANVNGGKWVVRLRKTQT----GRAWEDLCMAMLGEQF 694
I+P WE P N +GG+W++ + K +T W ++ +A++GEQF
Sbjct: 70 IQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQF 114
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 658 PCTTRLCFT*SDHPLPSINIGRIFPHWLNTQL 563
PC+ + C S+H L + + IFPH L Q+
Sbjct: 241 PCSNK-CSDSSNHELSDVELNSIFPHHLRDQI 271
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 658 PCTTRLCFT*SDHPLPSINIGRIFPHWLNTQL 563
PC+ + C S+H L + + IFPH L Q+
Sbjct: 241 PCSNK-CSDSSNHELSDVELNSIFPHHLRDQI 271
>Z81050-9|CAB02858.2| 400|Caenorhabditis elegans Hypothetical
protein C50B6.11 protein.
Length = 400
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 510 HIWLDLQSYLHSLTFIFLSWVLSQCG--KIRPMLMEG 614
++W LQ+YL + IF+SW+ G I P M G
Sbjct: 280 YMWYFLQAYLPTFFSIFISWIAFSLGPQAITPRTMIG 316
>Z93384-1|CAB07633.3| 342|Caenorhabditis elegans Hypothetical
protein H08M01.1 protein.
Length = 342
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 500 PTIVPHCPPDPPNVT 456
P +VPH PP PP+ T
Sbjct: 257 PVLVPHAPPAPPSPT 271
>Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical
protein K10D6.1 protein.
Length = 457
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 510 HIWLDLQSYLHSLTFIFLSWVLSQCG 587
+IW +Q+YL + IF+SW+ G
Sbjct: 264 YIWYFMQAYLPTYLTIFISWISFSLG 289
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 506 YTHLARPSELPPLSDLHL 559
YT +A PS+LPPL H+
Sbjct: 108 YTPIAGPSQLPPLQSAHI 125
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 506 YTHLARPSELPPLSDLHL 559
YT +A PS+LPPL H+
Sbjct: 108 YTPIAGPSQLPPLQSAHI 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,542,423
Number of Sequences: 27780
Number of extensions: 369419
Number of successful extensions: 932
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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