Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29a17
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22181-10|CAA80187.1| 266|Caenorhabditis elegans Hypothetical p... 32 0.42
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 30 1.3
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 30 1.3
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 30 1.3
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 30 1.3
AF016668-6|AAB66090.1| 275|Caenorhabditis elegans Hypothetical ... 29 3.0
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 3.9
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 29 3.9
X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic int... 28 6.9
U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate fi... 28 6.9
U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate fi... 28 6.9
U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical p... 28 6.9
U21308-18|AAB93311.1| 208|Caenorhabditis elegans Hypothetical p... 28 6.9
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 27 9.1
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 27 9.1
AF016421-10|AAC25792.1| 473|Caenorhabditis elegans Hypothetical... 27 9.1
>Z22181-10|CAA80187.1| 266|Caenorhabditis elegans Hypothetical
protein ZK632.12 protein.
Length = 266
Score = 31.9 bits (69), Expect = 0.42
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Frame = -2
Query: 456 LDRERARSCNPNTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPV--GCAPHG-R 286
L+R ++ + VW+ + E ++C + LV + + +C V C+ R
Sbjct: 134 LERGNKQAATAHAAVWV-PDGEAVKCMVCGKTQFNLVQRRHHCRNCGRVVCGACSSRTFR 192
Query: 285 IDDINSASIRCVCDDGYVSDYNADTETPYCRPRTVRDVMHDESFFPRAPCADGQVRLDHP 106
ID+++ +R VCD + S +A P+T + H++S +G R +
Sbjct: 193 IDNVHKKPVR-VCDHCFDSLSSATPGQEESEPKTGNRLHHEDSSSDSEDEVNGSGRSSNE 251
Query: 105 GLNDFYR 85
FYR
Sbjct: 252 SRPTFYR 258
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
protein B0393.5 protein.
Length = 1106
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Frame = -2
Query: 264 SIRCVCDDGYVSDYNADTETPYCRPRTVRDVMHDESFFPRAPCADGQVRLDHPGLNDFYR 85
+ C+C DGY D P R V + + ++ P + C + Q + L F R
Sbjct: 469 TFECLCKDGYEGD-------PSSECRDVNECKNPDACGPNSQCTNTQGGYECECLAGFER 521
Query: 84 ----RHFRLEDICVIDPCSVDPISGQRTRGRF 1
H D C ++PC I TRG +
Sbjct: 522 IAEGAHCTDRDECAVEPCHPAAIC-SNTRGSY 552
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 303 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 190
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 2637
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 303 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 190
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 303 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 190
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 2637
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 303 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 190
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 303 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 190
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 510 DGQEQ-EKLIRAGEAYCLA-LDRERARSCNPNTGVWLLAETETGFALLCSC 364
+G+E E+ + AG+ YC +D R C G W L ET + C+C
Sbjct: 439 EGEEDAERGLVAGKCYCKTNVDGNRCDRCK--NGYWNLTETNVDGCVACTC 487
>AF016668-6|AAB66090.1| 275|Caenorhabditis elegans Hypothetical
protein F36H9.2 protein.
Length = 275
Score = 29.1 bits (62), Expect = 3.0
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Frame = -2
Query: 372 CSCLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCR 193
C R GLV+ + + CNV P D + +A C + +V D N +CR
Sbjct: 68 CQTNRKGLVSCVCSTDMCNVDTFSIP---TDIVLTAPPTIKCYNKFVDDDNF-CFGQFCR 123
Query: 192 ------PRTVRDVMHDESFFPRAPCADGQVRLDHPGLNDFYRRHFRLEDICVIDPCSVD 34
P DV SFFP C+D + D +N Y + C + C+ D
Sbjct: 124 YSRQLVPNDFGDVQIS-SFFPERGCSDLEYNHDLASMNVCYTNDEMIVCQCNTEFCNKD 181
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 312 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 223
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 312 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 223
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 312 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 223
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic
intermediate filamentprotein protein.
Length = 543
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 34 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 144
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate
filament, b protein2, isoform c protein.
Length = 526
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 34 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 144
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate
filament, b protein2, isoform a protein.
Length = 543
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 34 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 144
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical
protein K05F1.10 protein.
Length = 140
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 210 ETPYCRPRTVRDVMHDESFFPRAPCADGQVR 118
E + P + + H + +FPR C DG VR
Sbjct: 73 ENLFSPPHCLNHLHHAKCYFPRCVCNDGYVR 103
>U21308-18|AAB93311.1| 208|Caenorhabditis elegans Hypothetical
protein ZK1290.1 protein.
Length = 208
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 651 IIIEGNTHECHKTLTPCSTHSDCNLC 574
+ +E T ++T TP H+DC LC
Sbjct: 23 VAVEETTKAANETTTPDGPHADCFLC 48
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -2
Query: 387 GFALLCSCLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSD 226
G+A +C L G + + E C P C + + CVCDDG+ D
Sbjct: 279 GYACICKPLWTGRNCENPVPEACT-PSPCLNGTCVLNDQYNKFTCVCDDGFFGD 331
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = -2
Query: 366 CLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 196
CLR + + ED V + +S S +C+C DG+ + ET C
Sbjct: 3634 CLRGECREVIELIEDSWTKVSTDDFSFVSPFHSRSAQCLCPDGF-GGKRCEVETNQC 3689
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = -2
Query: 366 CLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 196
CLR + + ED V + +S S +C+C DG+ + ET C
Sbjct: 3634 CLRGECREVIELIEDSWTKVSTDDFSFVSPFHSRSAQCLCPDGF-GGKRCEVETNQC 3689
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = -2
Query: 366 CLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 196
CLR + + ED V + +S S +C+C DG+ + ET C
Sbjct: 3634 CLRGECREVIELIEDSWTKVSTDDFSFVSPFHSRSAQCLCPDGF-GGKRCEVETNQC 3689
>AF016421-10|AAC25792.1| 473|Caenorhabditis elegans Hypothetical
protein F44E7.7 protein.
Length = 473
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 386 VSLFCAVAYGPDLLRSLTCTKIATCPWAARLTAVSTISTALRSG 255
V+ + V YGP LR + + WAA L VS SG
Sbjct: 291 VAFYVLVLYGPTYLREVLHFDVKGTGWAAALPFVSCAIVKFASG 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,534,868
Number of Sequences: 27780
Number of extensions: 331077
Number of successful extensions: 1144
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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