Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a11
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.0  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   3.9  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   3.9  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   3.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.9  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   5.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 277 KTESTDTMHTGNEE 318
           KTE+ D++H GN E
Sbjct: 23  KTEAFDSLHAGNAE 36


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 286 STDTMHTGNEEYFQISYYLLGSNTGNEIEIPQGKHIYNFTCTLPP 420
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 86  SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 128


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 286 STDTMHTGNEEYFQISYYLLGSNTGNEIEIPQGKHIYNFTCTLPP 420
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 86  SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 128


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 286 STDTMHTGNEEYFQISYYLLGSNTGNEIEIPQGKHIYNFTCTLPP 420
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 86  SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 128


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 286 STDTMHTGNEEYFQISYYLLGSNTGNEIEIPQGKHIYNFTCTLPP 420
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 319 SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 361


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +1

Query: 670 PGQVIPLKIDXENKSNV 720
           PG+++PL+ D  N++++
Sbjct: 55  PGKLVPLQCDLSNQNDI 71


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 286 STDTMHTGNEEYFQISYYLLGSNTGNEIEIP 378
           S  T+H  N  Y ++ YY +  N   +I +P
Sbjct: 86  SNKTIHNNNNNYKKLQYYNI--NYIEQIPVP 114


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 307 GNEEYFQISYYLLGSN 354
           G  EYF +S +L G+N
Sbjct: 46  GGLEYFLLSAFLFGAN 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,795
Number of Sequences: 438
Number of extensions: 4904
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)