Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a08
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    27   0.13 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    25   0.70 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   1.6  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   3.8  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   5.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 101 FCNATRNHWNYQYQPGPYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYG 247
           + +A+R+H    +QP PY    ++R   A    M  E  + + +  GYG
Sbjct: 153 YSSASRHH--VDHQPVPYLTPADDRGRVAAAAAMVAETASFHHDAAGYG 199


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 152 YPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYPKLPDIGEDSKDPHYPYDNPELKRNF 331
           +P TP+     +  Y + +     +  D G+G +    + GE + DP+ P+      R +
Sbjct: 484 WPDTPD---LISDGYRVIISHVDAWYLDCGFGRWR---ETGEAACDPYRPWQTVYNHRPW 537

Query: 332 NEPLHAT-AEIFGGDRC 379
            + LH    +I GG+ C
Sbjct: 538 QQ-LHLNKKQILGGEAC 553


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 248 DYPKLPDIGEDSKDPHYPYDNPE---LKRNF--NEPLHATAEIFGGDRCDIS 388
           D PK+ D+GED  +     D  +   +K  +  +E L+ T  I+  +  DIS
Sbjct: 243 DKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDEELNKTKPIWTRNADDIS 294


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 62  FNNSQSIRKTAALFCNATRNH 124
           FNNS  +++ +  F NAT ++
Sbjct: 366 FNNSDFVQRNSTEFDNATESY 386


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 266 DIGEDSKDPH 295
           D  EDSKDPH
Sbjct: 20  DNSEDSKDPH 29


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 341 LHATAEIFGGDRCDISIRRRFSLLH 415
           +H   + F  D+C    RRR  L+H
Sbjct: 240 IHTNEKPFECDKCRGRFRRRHHLVH 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,806
Number of Sequences: 336
Number of extensions: 3366
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)