Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a07
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.57 
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   7.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.0  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   9.3  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   9.3  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   9.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   9.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   9.3  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   9.3  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   9.3  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   9.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   9.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.3  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 242 AVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLP 126
           A ILT+TSP      + +S  S   +   TAA HL   P
Sbjct: 148 APILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSP 186


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 240 RDLNAHFTGFWRVHFNLLD 184
           R +NAH +G   V  NLLD
Sbjct: 55  RYMNAHLSGIQLVVRNLLD 73


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 490 PDGTRRFRCKGQELYH 537
           PDGT  +   GQ++ H
Sbjct: 417 PDGTMGYMMDGQQMMH 432


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 185 SRRLKWTRQKPVKCALRSRPPESAIL 262
           S R  W R +PV   L +R  + A L
Sbjct: 70  SNRPWWERYQPVSYILNTRSGDEAAL 95


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 185 SRRLKWTRQKPVKCALRSRPPESAIL 262
           S R  W R +PV   L +R  + A L
Sbjct: 71  SNRPWWERYQPVSYILNTRSGDEAAL 96


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 398 TSHSATHVNSA*IRKLICARRF 463
           T+H  TH      R  +C RRF
Sbjct: 38  TAHVRTHSGEKPFRCPVCDRRF 59


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 398 TSHSATHVNSA*IRKLICARRF 463
           T+H  TH      R  +C RRF
Sbjct: 294 TAHVRTHSGEKPFRCPVCDRRF 315


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 302 NTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATA 150
           +TP  S P +  A+      + +   TSP    +TS +S +   PAS  ++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSS 175


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 302 NTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATA 150
           +TP  S P +  A+      + +   TSP    +TS +S +   PAS  ++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSS 175


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 302 NTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATA 150
           +TP  S P +  A+      + +   TSP    +TS +S +   PAS  ++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSS 175


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 197 SISSMDSGLPASHATAAKHLITL 129
           ++S++  G    H TA  H+IT+
Sbjct: 146 TLSALLEGFTLYHTTAYLHIITM 168


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 197 SISSMDSGLPASHATAAKHLITL 129
           ++S++  G    H TA  H+IT+
Sbjct: 146 TLSALLEGFTLYHTTAYLHIITM 168


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 197 SISSMDSGLPASHATAAKHLITL 129
           ++S++  G    H TA  H+IT+
Sbjct: 146 TLSALLEGFTLYHTTAYLHIITM 168


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 302 NTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATA 150
           +TP  S P +  A+      + +   TSP    +TS +S +   PAS  ++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSS 175


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 302 NTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATA 150
           +TP  S P +  A+      + +   TSP    +TS +S +   PAS  ++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSS 175


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 302 NTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATA 150
           +TP  S P +  A+      + +   TSP    +TS +S +   PAS  ++
Sbjct: 81  STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSS 131


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 302 NTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATA 150
           +TP  S P +  A+      + +   TSP    +TS +S +   PAS  ++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSS 175


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 302 NTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATA 150
           +TP  S P +  A+      + +   TSP    +TS +S +   PAS  ++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSS 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,663
Number of Sequences: 336
Number of extensions: 3543
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)