Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a07
         (679 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    26   1.3  
AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.       25   2.9  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   5.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   5.1  
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    23   6.7  
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    23   6.7  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 161 GKQASRCPSRRLKWTR--QKPVKCALRSRPPESAILTRIHSPEKILREC 301
           G+Q  RC SRR K T+  ++  + ALR+   +   ++ I   E ++  C
Sbjct: 297 GRQHDRCDSRRWKTTQFNRQSFRVALRANNFQERAVSHIGMIEALVDAC 345


>AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 483 TLTLSRTNLLAQISFRIQAEFTCVALWDVQRYY 385
           T+ L   N+L  +   + +  +C  LW +  YY
Sbjct: 197 TVLLRHENILGYVGSDMTSRNSCTQLWLITHYY 229


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 181  SIEEIE-VDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 300
            + E+I+ +    + ++  K+   G  HTD Y+ S K   G+
Sbjct: 2253 TFEQIQGISQESSTDIWHKLVDAGYLHTDCYSTSAKKCHGL 2293


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 181  SIEEIE-VDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 300
            + E+I+ +    + ++  K+   G  HTD Y+ S K   G+
Sbjct: 2254 TFEQIQGISQESSTDIWHKLVDAGYLHTDCYSTSAKKCHGL 2294


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 327 AFMSQYYRKHSLRIFSGECIRVSMADSG 244
           A +++Y R H+L +F G  +R +   SG
Sbjct: 238 AVVNEYSRLHNLNMFDGVELRNTTRQSG 265


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 327 AFMSQYYRKHSLRIFSGECIRVSMADSG 244
           A +++Y R H+L +F G  +R +   SG
Sbjct: 214 AVVNEYSRLHNLNMFDGVELRNTTRQSG 241


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,275
Number of Sequences: 2352
Number of extensions: 15097
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)