Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a06
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    30   0.074
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.30 
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   1.6  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   2.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   2.8  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   2.8  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    24   3.7  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    24   3.7  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    24   4.9  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    23   6.5  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    23   6.5  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    23   8.5  

>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 29.9 bits (64), Expect = 0.074
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 164 KKFIINHNHEQVDETNKQEVVDKTDATTYNS 72
           KKF++NH+   +D+ +    V   D T Y++
Sbjct: 183 KKFVVNHSETDIDKNDNHVSVQTEDGTIYHA 213


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -1

Query: 257 VKYHMPLHYQXDINADKNV-VNAYDAIDVDPNKKFIINHNHEQVDETNKQEVVDKTDATT 81
           VKYH P         ++ V  N YD +  +PN   II    +  DE N  + ++  D   
Sbjct: 198 VKYH-PTEVHPSWTVEEPVHYNTYDGVVNEPNSSVIIEELDDDYDELN--DPMNNNDTPI 254

Query: 80  YNS 72
            NS
Sbjct: 255 TNS 257


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 162 FVGVNIDSVIRIYNVFICVNVXLIM 236
           F  +N D+ I IY+ F+C +  LIM
Sbjct: 330 FPTLNPDAYIYIYSYFLCKDTVLIM 354


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +1

Query: 85  VASVLSTTSCLFVSSTCS*L*LIINFLLGSTSIASYAFTTFLS 213
           + S ++++S +F+SS  S L    +++  +T+  S  FTT ++
Sbjct: 593 IVSSINSSSSVFISSVSSSLQYSSSYVTETTTSGSVGFTTTIA 635


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -1

Query: 260  DVKYHMPLHYQXDINADKNVVNAYDAIDVDPNKKFIINHNHEQVDETNKQEVV 102
            +VK    + YQ +I+     V  +  ++VDP+K    +     +D TNK +++
Sbjct: 847  NVKRFKLIIYQRNIHTGLETVYGHATLEVDPDKLKQGHGKDVWLDITNKGQIL 899


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 60  FYDARIVCCCVSFIDDFLFVCFIDLFVIM 146
           F+  +I CC +  +DD+ +     +F+I+
Sbjct: 201 FFVFQIFCCVLWCLDDYWYFSLFSMFMII 229


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 90  VSFIDDFLFVCFIDLFVIMINYKFFVGV 173
           + F+ +F   C I LFVI ++ K  VGV
Sbjct: 50  LGFLVEFFIFCLIPLFVIYVSSK--VGV 75


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 221 INADKNVVNAYDAIDVDPNK 162
           +  +K++++   A D+DPNK
Sbjct: 204 VQVNKSIISTIGAFDLDPNK 223


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 260 DVKYHMPLHYQXDINADKNV 201
           DVKYH+ ++YQ    + K V
Sbjct: 339 DVKYHLGMNYQRPTPSGKRV 358


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 108 FLFVCF--IDLFVIMINYKFFVGVNIDSVI 191
           FLFV    +DL V+++NYK  + V + S++
Sbjct: 104 FLFVIGMEVDLRVLVLNYKVTLLVTVFSIV 133


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 185 AIDVDPNKKFIINHNHEQVDETNKQEVVDKTD 90
           ++DV P     +N N E +  TN + VVD +D
Sbjct: 623 SVDVAPTPVEDVNVNLESISNTN-ESVVDLSD 653


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 77  CMLLRQFYRRLLVCLFHRLVRDY 145
           CM +  ++  LL C F R +R Y
Sbjct: 222 CMSIHPYFPLLLTCGFDRTLRIY 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 920,473
Number of Sequences: 5004
Number of extensions: 15513
Number of successful extensions: 57
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)