Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a06
         (284 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    26   4.1  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    26   5.4  
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    25   7.1  
04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815...    25   9.4  
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628...    25   9.4  

>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +3

Query: 90  VSFIDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVN 221
           +SF+ D  + C IDL   M+N+  +  +++   +  + + + V+
Sbjct: 497 ISFLSDLKWSCKIDLVSNMLNFSMWNSLHVAKYMDKFTLIVVVD 540


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 148 IIITNKSMKQTNKKSSIKLTQQHTI 74
           II+T +S K  N  S+I+L+  HT+
Sbjct: 306 IIVTTRSEKVVNTLSTIRLSYFHTV 330


>07_03_1783 +
           29480987-29481165,29481526-29481685,29481767-29481862,
           29481948-29482062,29482175-29482337,29482536-29482707,
           29483924-29484013,29484137-29484598,29484675-29485268,
           29485486-29485554,29485810-29485902,29486432-29486677,
           29487277-29487417,29487748-29487828,29487911-29487973,
           29488059-29488166,29488303-29488383,29488474-29488521,
           29488979-29489053,29489973-29490068,29490156-29490236,
           29490295-29490402,29490989-29491033,29491119-29491202,
           29491379-29491482,29491581-29491728
          Length = 1233

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -1

Query: 209 KNVVNAYDAIDVDPNKKFIINHNHEQVDETNKQEVVDKTD 90
           +N++N  D+I+   N+   +       D +NK+ ++D  D
Sbjct: 304 QNIINQADSIEHSSNRVESLPLETTSTDNSNKRNLIDDID 343


>04_04_0418 +
           25077748-25078101,25079413-25079538,25080683-25081593,
           25081970-25082453
          Length = 624

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 48  YHLNFYDARIVCCCVSFI 101
           + L FY   IVCCC + +
Sbjct: 577 FRLTFYVCAIVCCCGTLV 594


>01_06_1200 -
           35362412-35362432,35362526-35362715,35362799-35362899,
           35362985-35363116,35363204-35363302,35363493-35363568,
           35363649-35363941,35364032-35364160,35364332-35364480,
           35364562-35364633,35364728-35364776,35365039-35365107,
           35365201-35365256,35365357-35365429,35365508-35365584,
           35365847-35365934,35366086-35366259,35366358-35366473,
           35366681-35366984,35367084-35367146,35367224-35367286,
           35367393-35367506,35368672-35368675,35368894-35368952,
           35369024-35369098,35369691-35369798,35372331-35372792
          Length = 1071

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 215 ADKNVVNAYDAIDVDPNKKFIINHNHEQVDETNKQEVVDKTDA 87
           AD +  ++YDA+++D  K       H      ++Q VVD + A
Sbjct: 859 ADSSKWHSYDAVNIDNVKANFYTFGHSLKKSGHEQLVVDPSFA 901


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,109,421
Number of Sequences: 37544
Number of extensions: 76041
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)