Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a06
         (284 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    31   0.10 
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    27   1.6  
Z81581-8|CAB04661.2|  244|Caenorhabditis elegans Hypothetical pr...    27   2.2  
AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical ...    27   2.2  
AY241927-1|AAO85276.1|  330|Caenorhabditis elegans beta-1,3-gala...    26   3.8  
AC024746-16|AAF60408.1|  330|Caenorhabditis elegans Squashed vul...    26   3.8  
Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical pr...    25   6.6  
U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine d...    25   6.6  
AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical ...    25   6.6  
Z72503-3|CAE17724.1|  217|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    25   8.7  

>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 117 VCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVNVXLIM*RHMV 251
           VC I    + INY    G  +     I+NV ICV + L+    MV
Sbjct: 208 VCLIAAVYVFINYAIGDGCGLPKFFVIFNVLICVAISLLSVSPMV 252


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 84  CCVSFIDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVFIC 215
           C   F +      F+D   +++NYK+F+        R Y +++C
Sbjct: 198 CIRHFFEQHYKHLFLDSRHLLLNYKYFLRYQEKQEERAYGLYVC 241


>Z81581-8|CAB04661.2|  244|Caenorhabditis elegans Hypothetical
           protein T02E1.6 protein.
          Length = 244

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 108 FLFVCFIDLFVIMINYKFFVGVN--IDSVIRIYNVFICVNVXLIM 236
           FLF+  +   +I+I + FFV  N  I  ++   NV I + V LI+
Sbjct: 115 FLFLELVIAMMILITWSFFVENNEMIPIILCFVNVIILIIVVLIL 159


>AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical
           protein Y48C3A.11 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 67  MQELYVVASVLSTTSCLFVSSTCS*L*LIINFL 165
           M  +  ++S+L+ T+   +S +CS L L INFL
Sbjct: 41  MLTITTLSSMLNPTNMFLISMSCSQLALCINFL 73


>AY241927-1|AAO85276.1|  330|Caenorhabditis elegans
           beta-1,3-galactosyltransferase protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 120 CFIDLFVIMINYKFFVGVNIDSVIRIYNVFI 212
           CF+  F     +KFF+  +IDS +RI  + I
Sbjct: 141 CFVHAFA-NFKFKFFLKTDIDSFVRITPLII 170


>AC024746-16|AAF60408.1|  330|Caenorhabditis elegans Squashed vulva
           protein 2 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 120 CFIDLFVIMINYKFFVGVNIDSVIRIYNVFI 212
           CF+  F     +KFF+  +IDS +RI  + I
Sbjct: 141 CFVHAFA-NFKFKFFLKTDIDSFVRITPLII 170


>Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical
           protein R05D7.5 protein.
          Length = 331

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 72  RIVCCCV---SFIDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVNVXLIM 236
           R+ C C+   SF++  ++VC  + F  +    FFV   I +  +     IC  +  I+
Sbjct: 18  RLTCFCLLPASFVNRHIYVCIPNSFSPLPTGCFFVVTEISNTYQNRRHMICGAIVTIL 75


>U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine dna
           alkyltransferaseprotein 2 protein.
          Length = 274

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 170 PNKKFIINHNHEQVDETNKQEVVDKTDATTY 78
           P + F  +H H+ +DE   QEV ++  +  +
Sbjct: 76  PRESFYSSHEHDPMDEVLLQEVKEEAHSLAF 106


>AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.3 protein.
          Length = 162

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 195 IYNVFICVNVXLIM*RHMVFYIYFNTITTI 284
           I ++F  + V   + R++ F+IYFN++ T+
Sbjct: 91  ISSIFALIFVLQDLKRYLRFHIYFNSVITL 120


>Z72503-3|CAE17724.1|  217|Caenorhabditis elegans Hypothetical
           protein C26C6.9 protein.
          Length = 217

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 6   NTIKR*CHCYFKL*YHLNFYDARIV 80
           N+I    H  +K+ YHL FY+  +V
Sbjct: 145 NSIMASTHRIYKIYYHLKFYNQMVV 169


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -1

Query: 269 IKIDVKYHMPLHYQXDINADKNVVNAYDAIDVDPN--KKFIINHNHEQVDETNKQEVVDK 96
           +K + KY+  + ++  I    N        D   +  ++F++NH+        K  V D+
Sbjct: 811 MKSETKYNYNMPHRAVIKESSNTTKVRVVYDASSHAIREFVVNHDESMEKIDPKDRVSDR 870

Query: 95  T 93
           T
Sbjct: 871 T 871


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
           protein Y40C7B.1 protein.
          Length = 916

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 221 INADKNVVNAYDAIDVDPNKKFIINHNHEQVDETNKQE 108
           +   +N  +  D   +DPNKK +I  +   +++ NK E
Sbjct: 780 VTTSENCEDIPDPSSIDPNKKTLIIFDDLMLEKQNKIE 817


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,074,692
Number of Sequences: 27780
Number of extensions: 87676
Number of successful extensions: 257
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)