Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29a04
(244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 28 0.15
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 1.1
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 24 3.2
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 23 4.3
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 23 5.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 23 7.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 22 9.9
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 22 9.9
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc... 22 9.9
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 22 9.9
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 22 9.9
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 22 9.9
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 28.3 bits (60), Expect = 0.15
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -2
Query: 240 FFINALCIMQFNSI*NRMKLLSLSFKTLFYTLLSVT 133
+F++ L I+ F + M +LS+SF+ LFY +L +T
Sbjct: 720 YFLDRLAIL-FLTFSPTMCMLSISFEALFYVVLFIT 754
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 1.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 121 TDNTRKLSTANLLEYFRLKILW*LLVTCRECHVLSLH 11
TDN RK+ST N L L LL + + CH H
Sbjct: 39 TDNLRKISTPNKLAVSLAGGLKALLSSNQLCHAFHYH 75
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 95 SGQFPRVVRESTAVTDNKV*NSVLKDKLNSFIL 193
S FPRVV ++ +T+ V N+ + + S +L
Sbjct: 354 SASFPRVVSQNNMLTNKPVLNNHFQQSMYSNLL 386
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 23.4 bits (48), Expect = 4.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 160 AILHFVVSYCRGFTDNTRKLSTAN 89
AI+ V++ C G T N+ + STA+
Sbjct: 26 AIITKVLTACMGQTQNSERFSTAS 49
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 75 LDSKYYGDYW*RVENVMFSLSIK 7
L +KY+ D W R+EN + S S K
Sbjct: 142 LFTKYFFDVWERLENAVGSDSEK 164
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 22.6 bits (46), Expect = 7.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 21 RT*HSLHVTNSHHNILSLKYSKRLAVDNFL-VLSVNPR 131
RT HVT + H+I KYS L + + VL ++P+
Sbjct: 1088 RTLDDFHVTANCHSIDCFKYSIALCHNKGIDVLRLDPK 1125
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 22.2 bits (45), Expect = 9.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 121 TDNTRKLSTANLLEYFRLKILW*LLVTCRECHVLSLHKAY 2
T N ST N +++F L LW L H L L +A+
Sbjct: 1007 TPNAYLRSTWNCIDFFVLVTLWINLYAVLTSHAL-LSRAF 1045
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 22.2 bits (45), Expect = 9.9
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +3
Query: 30 HSLHVTNSHHN 62
++ H+TN+HHN
Sbjct: 235 YTYHLTNTHHN 245
>SPAC5D6.04 |||auxin family transmembrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 22.2 bits (45), Expect = 9.9
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -2
Query: 243 FFFINALCIMQFNSI*NRMKLLSLSFKTLFYTLLSVTAV 127
+FF L + + N L+ LS +FY ++S ++
Sbjct: 56 YFFTPCLVFEKVGNGLNLKMLIDLSLLPVFYVIISAASI 94
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 22.2 bits (45), Expect = 9.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 51 SHHNILSLKYSKRLAVDNFLVLSVNPRQ*LTTK 149
SH N + ++ SK + N + VNP + L TK
Sbjct: 750 SHANSVRIQRSKGDVILNLHLPKVNPERFLPTK 782
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 22.2 bits (45), Expect = 9.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 42 VTNSHHNILSLKYSKRLAVDNFLVLSV 122
VTN+ + + Y KR A +NF++LS+
Sbjct: 290 VTNATRQLEGV-YEKRGAAENFVLLSL 315
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 22.2 bits (45), Expect = 9.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 164 LKDKLNSFILF*MLLNCIMHNAFIK 238
LK +L LF +L CI+ F+K
Sbjct: 321 LKHRLEILSLFSVLFTCIVAGLFLK 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 998,111
Number of Sequences: 5004
Number of extensions: 16987
Number of successful extensions: 41
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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