Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a04
         (244 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0128 + 5567202-5568107,5568587-5568968,5570356-5570423,557...    29   0.69 
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478...    25   8.5  

>10_02_0128 +
           5567202-5568107,5568587-5568968,5570356-5570423,
           5570899-5571034,5571206-5571283,5571623-5571747
          Length = 564

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 183 LLSLSFKTLFYTLLSVTAVDSRTTRGNCPLPIF*NILD 70
           +LSL      + L  + A   R   G CPLP+  N+LD
Sbjct: 10  MLSLLLVLFSHLLQRIAAARRRLPPGPCPLPLIGNLLD 47


>11_01_0600 -
           4780579-4780839,4781256-4781324,4781535-4781598,
           4781791-4781919,4782234-4782541
          Length = 276

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -3

Query: 173 YLLKRYFTLCCQLLPWIHGQHEEIVH 96
           +L+   + L C  + WI G++++++H
Sbjct: 105 HLIPLKYHLICGRIAWIPGRYQDLIH 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,938,002
Number of Sequences: 37544
Number of extensions: 92947
Number of successful extensions: 136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)