Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a04
         (244 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81105-3|CAB03217.1|  316|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical ...    26   3.1  
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U46671-7|AAA85752.1|  194|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.        25   9.4  

>Z81105-3|CAB03217.1|  316|Caenorhabditis elegans Hypothetical
           protein R05D7.3 protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 78  YSKRLAVDNFLVLSVNPRQ*LTTKCKI 158
           +S+  AV NF ++S+N +  ++ KCK+
Sbjct: 22  FSEIFAVKNFKIISINFKTHVSQKCKL 48


>AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical
           protein H41C03.2 protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 42  VTNSHHNILSLKYSKRLAVDNFLV 113
           +  +HHN   + Y   +AVDN+ +
Sbjct: 295 IETAHHNSFEIFYGSHMAVDNYKI 318


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 89  IGSGQFPRVVRESTAVTDNKV*NSVLKDKLNSFI 190
           IG     R   E+TA +DNK+  +V+KD +   I
Sbjct: 534 IGFYDLARHAVEATAQSDNKITWNVIKDSMGDLI 567


>Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical
           protein T24H10.7b protein.
          Length = 299

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 136 YCRGFTDNTRKLSTANLLEY 77
           YC+GF D  R + T N  E+
Sbjct: 36  YCKGFYDALRVMQTTNKYEF 55


>Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical
           protein T24H10.7a protein.
          Length = 319

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 136 YCRGFTDNTRKLSTANLLEY 77
           YC+GF D  R + T N  E+
Sbjct: 56  YCKGFYDALRVMQTTNKYEF 75


>Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical
           protein K02A4.1 protein.
          Length = 415

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 143 CQLLPWIHGQHEEIVHCQSFRIF 75
           CQ + W++G++E++    +  IF
Sbjct: 264 CQQVLWLYGENEDLTEVGTMNIF 286


>U46671-7|AAA85752.1|  194|Caenorhabditis elegans Hypothetical
           protein C14E2.6 protein.
          Length = 194

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 51  SHHNILSLKYSKRLAVDNFLV 113
           +HHN   + Y K +  DN+ +
Sbjct: 135 AHHNTFEIYYPKHMTTDNYRI 155


>U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.
          Length = 378

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 143 CQLLPWIHGQHEEIVHCQSFRIF 75
           CQ + W++G++E++    +  IF
Sbjct: 245 CQQVLWLYGENEDLTEVGTMNIF 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,488,500
Number of Sequences: 27780
Number of extensions: 93462
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)