Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a03
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    50   4e-07
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534...    28   2.5  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    27   3.3  
12_02_0900 - 24153734-24153943,24154461-24155110,24155198-241553...    27   5.7  
11_01_0056 + 427376-427408,427589-427694,427777-427823,427907-42...    27   5.7  
03_01_0074 + 610948-611184,611745-611867,611983-612082,612167-61...    27   5.7  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +2

Query: 11  KDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 163
           K +LG+ K+LQFF GESM  DG +    Y+  DG   P  ++F HGL+E K
Sbjct: 119 KYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167


>09_04_0741 -
           19852339-19852497,19853185-19853246,19853352-19853415,
           19853561-19853614,19853744-19853890,19854460-19854564,
           19854651-19854794,19854987-19855093,19855613-19855712,
           19855804-19855833,19856492-19856608,19856705-19856828,
           19857143-19857189,19857272-19857400,19857777-19857852,
           19858446-19858543,19858630-19858671,19858811-19859044
          Length = 612

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 119 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 33
           F YH  +Y+ SW  C H N ++ Q +  +P
Sbjct: 264 FLYHGRMYVSSWHICFHSNVFSKQIKVMLP 293


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 147 PCL-KNIMIGICVPSKSLYSIMATMPSQSMDSPV 49
           PCL K+   GI  P+K    ++ TMPS S  + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233


>12_02_0900 -
           24153734-24153943,24154461-24155110,24155198-24155334,
           24156595-24157223
          Length = 541

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 162 FSSSRPCLKNIMIGICVPSKSLYSI 88
           F+ ++P +KN+ IGI VP  S  +I
Sbjct: 243 FTDTKPNMKNLFIGILVPKLSSRTI 267


>11_01_0056 +
           427376-427408,427589-427694,427777-427823,427907-428065,
           429018-429092,429379-429973,430529-430943,431105-431118,
           431476-431591
          Length = 519

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 141 LKNIMIGICVPSKSLYSIMATMPSQSMDSP 52
           L N M+G  +P+  L S+   +P Q++  P
Sbjct: 187 LPNSMVGFSLPNDGLRSVHRNLPDQALGPP 216


>03_01_0074 +
           610948-611184,611745-611867,611983-612082,612167-612213,
           612292-612450,613033-613132,613209-613300,613390-614532,
           614949-615041,615408-615493,615746-615873,615965-616086,
           616202-616270,616380-616518,616624-616686,616887-616930,
           617339-617425
          Length = 943

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 141 LKNIMIGICVPSKSLYSIMATMPSQSMDSP 52
           L N M+G  +P++ L S+   +P Q++  P
Sbjct: 332 LPNPMVGFSLPNERLRSVHRNLPDQALGPP 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,025,274
Number of Sequences: 37544
Number of extensions: 156174
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)