Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a01
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    27   2.8  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.6  

>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 498 YGVRYLGTKFAHNMSDLKM*CNAYCFF 578
           + + +L T FAH++SD+ + C  + FF
Sbjct: 190 FALSWLITWFAHDVSDISVVCRLFDFF 216


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 335 KKFYLLQR*VRLCFYINLCHKLLLDMLHTLHNVYGATHLET*VWSLF 195
           +K+ ++ R      Y+NL   +++D +H LH+  G   LE+ V  +F
Sbjct: 630 EKWDIITRKANDLSYVNLVRLVIIDEVHLLHDERGPV-LESIVARIF 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,433
Number of Sequences: 5004
Number of extensions: 50874
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)