Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29a01
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    29   2.6  
U80028-1|AAN73865.1|  369|Caenorhabditis elegans Serpentine rece...    28   4.5  
U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine rece...    27   7.9  

>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 296 SIVSLTFAINKIFYFVIHIHSKVKNLIVLNFILS-QFNSLMTFVFF 430
           SI +L + I +  +F +H H  +K L+++ FI +  F+  + F FF
Sbjct: 35  SIPALIYFITRKIFF-LHFHGNLKCLLIVYFICNLLFSMALCFAFF 79


>U80028-1|AAN73865.1|  369|Caenorhabditis elegans Serpentine
           receptor, class w protein138 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +2

Query: 242 YEVYVTCLITTYDIS*YKSIVSLTFAINKIFYFVIHIHSKVKNLIVLNFILSQFNSLMTF 421
           Y++     + T  +  Y+SI+S+T  +  I +F I     ++N  + N I++    L   
Sbjct: 23  YQIERNLSVFTEKVLSYESIISITCILINILHFTILTRKSMRNSSI-NIIMTAVAILDIC 81

Query: 422 VFFLYHKSFKNEF 460
            FF+  K     F
Sbjct: 82  TFFVGLKKIVERF 94


>U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 26 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +2

Query: 242 YEVYVTCLITTYDIS*YKSIVSLTFAINKIFYFVIHIHSKVKNLIVLNFILSQFNSLMTF 421
           Y  Y+T   +TY      S+ SLTF      YF   ++ K +NLI +  ++ QF+  +  
Sbjct: 113 YFYYMTNYFSTY------SVFSLTFDRLIACYFP-KLYIKTENLITITLLIIQFSLTVGT 165

Query: 422 VFFLY 436
            F+ Y
Sbjct: 166 HFYAY 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,928
Number of Sequences: 27780
Number of extensions: 286846
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)