Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28p20
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    31   0.032
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   0.92 
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    25   2.1  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    23   6.5  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    23   8.5  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 31.1 bits (67), Expect = 0.032
 Identities = 17/42 (40%), Positives = 30/42 (71%)
 Frame = +3

Query: 69  HKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVWRRLLD 194
           H L+M  ++  +++DE Q  KEEMKR+ +LR +++  R+LL+
Sbjct: 13  HPLLMRNQEK-VWKDE-QAHKEEMKRVEQLRREIEEERQLLE 52


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 0.92
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 66  THKLMMNLRDYGLFRDEHQDFKEEMKRLRELR 161
           T K M+ L++   F+D+++  KEE KRL + R
Sbjct: 178 TQKQMLQLQNEN-FKDDYEKIKEENKRLYKER 208


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 6   SARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEM 140
           SA    +NE  I +Y RH ++HK  +       + DE +    E+
Sbjct: 258 SANAGSSNEISIPHYQRHKKSHKGAIQDSSIQSYLDEEEKLSREL 302


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 54  RHMETHKLMMNLRDYGLFRDEHQDFKE 134
           R+ E+HKL M++ +  L+++EH   K+
Sbjct: 530 RNEESHKLWMSVLNRLLWKNEHGSPKD 556


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 240 YTKHTTQLILFLPPSYQATASK 175
           +T   T + +FL PSYQ+ A+K
Sbjct: 258 FTDIPTIIPIFLDPSYQSYAAK 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 960,495
Number of Sequences: 5004
Number of extensions: 15869
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)