Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28p20
         (284 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0372 + 2668597-2668671,2669021-2669126,2669279-2669334,266...    30   0.33 
01_06_1224 - 35508842-35510404                                         28   1.3  
06_03_0615 - 22761375-22761760,22762218-22765026                       27   2.3  
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571...    27   2.3  
05_05_0173 + 22956927-22958615                                         26   4.1  
04_04_1216 + 31811403-31812267,31813187-31813877,31813981-318141...    25   9.4  
04_01_0067 - 673381-673387,675388-678131                               25   9.4  
01_06_1571 - 38314952-38315089,38315958-38315987,38316107-383162...    25   9.4  

>02_01_0372 +
           2668597-2668671,2669021-2669126,2669279-2669334,
           2669830-2669907,2669993-2670066,2670147-2670280,
           2670377-2670472,2670703-2670854
          Length = 256

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 24  TNEEIIHYYPRHMETHKL---MMNLRDYGLFRDEHQDFKEEMKRLREL 158
           TNE +I      +E HK    M+N R   +  D HQ +K E++ L+++
Sbjct: 138 TNEAVIKQLNLELEAHKAHIDMLNSRLEQVTADVHQQYKNEIQDLKDV 185


>01_06_1224 - 35508842-35510404
          Length = 520

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 105 FRDEHQDFKEEMKRLRELRGKVKVWRRLLD 194
           FR +    +   +RL E  G +  WRRLLD
Sbjct: 282 FRQQFHHLRPISRRLGEAHGLLSSWRRLLD 311


>06_03_0615 - 22761375-22761760,22762218-22765026
          Length = 1064

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 207 LPPSYQATASKP*LYLGVLAISSSPP*SLDAHHGIDHNLLNSS 79
           +PP+Y + A+   L L   A+    P SL A  G+ + LLNS+
Sbjct: 111 IPPAYASLAALRVLDLSSNALYGDIPASLGALSGLQYLLLNSN 153


>02_01_0767 -
           5709733-5709789,5709845-5709871,5710374-5710449,
           5710542-5710661,5711321-5711421,5711618-5711743,
           5713504-5713596,5713694-5713816,5713889-5714032,
           5714539-5714672,5714893-5715002,5715315-5715430,
           5716438-5716572,5716650-5716820,5717545-5717709,
           5718165-5718242,5718313-5718445,5718551-5718741,
           5718842-5718914,5719001-5719056,5719142-5719300,
           5719383-5719496,5719562-5719654,5720544-5720726,
           5720801-5720878,5720966-5721052,5721135-5721216,
           5721288-5721400,5721486-5721636,5721759-5721877,
           5721966-5722163,5722377-5722442,5723837-5723957,
           5724224-5724343,5724412-5724542,5725210-5725341,
           5725418-5725519,5726231-5726437,5726510-5726626,
           5727468-5727623,5727721-5727810,5728624-5728848,
           5728969-5729091,5729202-5729284,5729459-5729618,
           5730264-5730374,5730652-5730751,5731375-5731454,
           5731752-5731847,5731961-5732110
          Length = 1991

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 27  NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 173
           +E+I++ Y  +M  HKLMM    +   RD+ ++ KE+        G ++
Sbjct: 379 DEDIVYMYTGYM--HKLMMCFLSHPTSRDKIKEIKEKTMNALSPYGSIR 425


>05_05_0173 + 22956927-22958615
          Length = 562

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 105 FRDEHQDFKEEMKRLRELRGKVKVWRRLLD 194
           FR +    +   +RL E  G +  WRR+LD
Sbjct: 327 FRQKFHHLRPISRRLGEAHGILSSWRRILD 356


>04_04_1216 +
           31811403-31812267,31813187-31813877,31813981-31814131,
           31814289-31814351,31814590-31814664,31814934-31815032
          Length = 647

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 87  LRDYGLFRDEHQDFKEEMKRLREL 158
           L D G F DE +DF +E + +R++
Sbjct: 267 LGDIGSFEDEIEDFTDEERFMRDV 290


>04_01_0067 - 673381-673387,675388-678131
          Length = 916

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +3

Query: 132 EEMKRLRELRGKVKV 176
           EE+K L++LRGK+K+
Sbjct: 699 EELKGLKDLRGKLKI 713


>01_06_1571 -
           38314952-38315089,38315958-38315987,38316107-38316206,
           38316322-38316383,38316465-38316531,38316889-38317076
          Length = 194

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +3

Query: 18  LHTNEEIIHYYPRHMETHK----LMMNLRDYGLFRDEHQDFKEEM 140
           ++ N++++ ++ RH+ TH+    L  ++RD  L     +DF  +M
Sbjct: 133 VNVNDKLMDHWERHVRTHQQDIALSGSMRDLELGYHPDRDFAAQM 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,340,459
Number of Sequences: 37544
Number of extensions: 103704
Number of successful extensions: 237
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)